Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   Q2B68_RS08665 Genome accession   NZ_CP130280
Coordinates   1687120..1687569 (+) Length   149 a.a.
NCBI ID   WP_003154472.1    Uniprot ID   A7Z4C2
Organism   Bacillus amyloliquefaciens strain PM415     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1682120..1692569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2B68_RS08625 (Q2B68_08625) ctaE 1682250..1682873 (+) 624 WP_003154482.1 cytochrome c oxidase subunit III -
  Q2B68_RS08630 (Q2B68_08630) ctaF 1682876..1683208 (+) 333 WP_003154481.1 cytochrome c oxidase subunit IVB -
  Q2B68_RS08635 (Q2B68_08635) ctaG 1683233..1684117 (+) 885 WP_302565199.1 cytochrome c oxidase assembly factor CtaG -
  Q2B68_RS08640 (Q2B68_08640) - 1684151..1684510 (-) 360 WP_003154479.1 YugN family protein -
  Q2B68_RS08645 (Q2B68_08645) - 1684651..1685094 (+) 444 WP_003154478.1 CBS domain-containing protein -
  Q2B68_RS08650 (Q2B68_08650) - 1685179..1686219 (+) 1041 WP_003154477.1 CAP domain-containing protein -
  Q2B68_RS08655 (Q2B68_08655) - 1686384..1686794 (+) 411 WP_014304959.1 YlbD family protein -
  Q2B68_RS08660 (Q2B68_08660) - 1686810..1687049 (+) 240 WP_003154475.1 YlbE-like family protein -
  Q2B68_RS08665 (Q2B68_08665) ylbF 1687120..1687569 (+) 450 WP_003154472.1 YlbF family regulator Regulator
  Q2B68_RS08670 (Q2B68_08670) - 1687628..1687900 (+) 273 WP_003154470.1 YlbG family protein -
  Q2B68_RS08675 (Q2B68_08675) - 1687991..1688200 (+) 210 WP_015388275.1 hypothetical protein -
  Q2B68_RS08680 (Q2B68_08680) rsmD 1688200..1688754 (+) 555 WP_024085271.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  Q2B68_RS08685 (Q2B68_08685) coaD 1688759..1689241 (+) 483 WP_003154467.1 pantetheine-phosphate adenylyltransferase -
  Q2B68_RS08690 (Q2B68_08690) ylbJ 1689260..1690486 (-) 1227 WP_003154466.1 sporulation integral membrane protein YlbJ -
  Q2B68_RS08695 (Q2B68_08695) - 1690666..1691445 (+) 780 WP_014304961.1 patatin family protein -
  Q2B68_RS08700 (Q2B68_08700) sepM 1691451..1692473 (+) 1023 WP_043867074.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16777.86 Da        Isoelectric Point: 4.8089

>NTDB_id=781753 Q2B68_RS08665 WP_003154472.1 1687120..1687569(+) (ylbF) [Bacillus amyloliquefaciens strain PM415]
MYATIESVKLQSEAEQLAGMILQSETAENYRDCYKRLREDEEAGRIIRSFMSVKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=781753 Q2B68_RS08665 WP_003154472.1 1687120..1687569(+) (ylbF) [Bacillus amyloliquefaciens strain PM415]
ATGTATGCAACAATTGAGTCCGTCAAGCTTCAAAGTGAAGCGGAACAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCGTGAAGATGAAGAGGCAGGGCGGATCATTCGTTCTTTTATGAGCGTTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATACCATCCTGATTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAGCTCGATTTAAACGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTGCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGCTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

87.919

100

0.879