Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   M0P28_RS03900 Genome accession   NZ_CP116958
Coordinates   727882..728748 (+) Length   288 a.a.
NCBI ID   WP_013851660.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP074     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 722882..733748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P28_RS03870 (M0P28_03870) - 722967..723845 (+) 879 WP_003064089.1 F0F1 ATP synthase subunit gamma -
  M0P28_RS03875 (M0P28_03875) atpD 723912..725318 (+) 1407 WP_003064092.1 F0F1 ATP synthase subunit beta -
  M0P28_RS03880 (M0P28_03880) - 725331..725747 (+) 417 WP_003064095.1 F0F1 ATP synthase subunit epsilon -
  M0P28_RS03885 (M0P28_03885) - 726003..726239 (+) 237 WP_003064099.1 DUF1146 family protein -
  M0P28_RS03890 (M0P28_03890) murA 726302..727576 (+) 1275 WP_041974287.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  M0P28_RS03895 (M0P28_03895) - 727579..727767 (+) 189 WP_003064103.1 DNA-directed RNA polymerase subunit beta -
  M0P28_RS03900 (M0P28_03900) endA 727882..728748 (+) 867 WP_013851660.1 DNA/RNA non-specific endonuclease Machinery gene
  M0P28_RS03905 (M0P28_03905) pheS 729035..730078 (+) 1044 WP_013642932.1 phenylalanine--tRNA ligase subunit alpha -
  M0P28_RS03910 (M0P28_03910) - 730114..730606 (+) 493 Protein_708 GNAT family N-acetyltransferase -
  M0P28_RS03915 (M0P28_03915) pheT 730677..733082 (+) 2406 WP_013851661.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 30849.99 Da        Isoelectric Point: 6.4945

>NTDB_id=781692 M0P28_RS03900 WP_013851660.1 727882..728748(+) (endA) [Streptococcus pasteurianus strain WUSP074]
MAKKSKLSKQIKSLLSLVILLVGIGTGWVTISDSNDPLNQVVSLITGDSSSEITSNQSGSDSATPTQALAETVLTDSVKE
QLGTNIEWNGAGAYIINNNQTSLNAKVSSQPYANNKTKTVQGQTVPTVANALLSKSTRQYKSREETGNGSTSWKPAGWHQ
VQDLSGTYSHAVDRGHLLGYALVGGLKGFDASTSNPDNVATQTAWANEANSESSTGQNYYESLVRKALDQNKRVRYRVTL
IYDGDNLLASGTHLEAKSSDGSLEFNVFIPNVQSGLTFDYYSGQVSVN

Nucleotide


Download         Length: 867 bp        

>NTDB_id=781692 M0P28_RS03900 WP_013851660.1 727882..728748(+) (endA) [Streptococcus pasteurianus strain WUSP074]
ATGGCAAAGAAATCAAAATTGTCTAAACAGATAAAATCCCTGCTGTCTTTGGTGATTTTGTTAGTTGGGATTGGTACTGG
TTGGGTGACGATATCAGATTCGAACGACCCGCTCAATCAAGTCGTTTCGTTAATTACTGGTGATTCCTCTTCTGAAATAA
CATCAAATCAATCGGGTTCTGATTCAGCAACGCCAACACAAGCTTTAGCAGAGACGGTATTAACAGATAGTGTCAAAGAG
CAGTTGGGAACAAATATAGAATGGAATGGTGCGGGAGCCTATATTATCAATAATAATCAAACCTCCCTAAATGCAAAAGT
TTCAAGTCAACCTTACGCCAACAACAAAACGAAAACGGTGCAAGGTCAGACCGTTCCAACGGTTGCTAATGCTTTGCTAA
GTAAGTCAACTCGTCAATACAAAAGTCGTGAGGAGACTGGAAATGGCTCAACGTCTTGGAAGCCAGCTGGTTGGCATCAA
GTTCAAGACCTTTCAGGGACTTATAGCCATGCGGTAGATCGTGGTCATTTGCTTGGCTATGCTTTGGTTGGTGGTCTAAA
AGGCTTTGATGCGTCAACAAGCAATCCTGACAATGTGGCAACACAGACTGCCTGGGCAAACGAGGCAAATTCGGAAAGTT
CAACTGGTCAAAATTACTATGAATCCCTTGTCCGCAAAGCTCTTGACCAAAATAAACGAGTTCGTTACCGTGTTACCTTG
ATTTACGATGGAGACAATCTTTTAGCAAGTGGCACGCATTTGGAAGCCAAATCATCCGATGGTAGTCTAGAATTTAACGT
CTTTATTCCAAATGTGCAAAGCGGACTAACATTTGATTATTATTCAGGTCAAGTTAGTGTGAATTGA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(96-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

66.129

86.111

0.569
  endA Streptococcus pneumoniae D39

66.129

86.111

0.569
  endA Streptococcus pneumoniae R6

66.129

86.111

0.569
  endA Streptococcus pneumoniae TIGR4

66.129

86.111

0.569