Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   M0P28_RS01895 Genome accession   NZ_CP116958
Coordinates   337575..338504 (+) Length   309 a.a.
NCBI ID   WP_013851464.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP074     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 332575..343504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P28_RS01875 (M0P28_01875) - 332796..334451 (+) 1656 WP_013851462.1 peptide ABC transporter substrate-binding protein -
  M0P28_RS01880 (M0P28_01880) - 334561..335475 (+) 915 WP_003063307.1 ABC transporter permease -
  M0P28_RS01885 (M0P28_01885) - 335486..336517 (+) 1032 WP_013851463.1 ABC transporter permease -
  M0P28_RS01890 (M0P28_01890) oppD 336529..337575 (+) 1047 WP_003063311.1 ABC transporter ATP-binding protein Regulator
  M0P28_RS01895 (M0P28_01895) amiF 337575..338504 (+) 930 WP_013851464.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35038.82 Da        Isoelectric Point: 5.6193

>NTDB_id=781677 M0P28_RS01895 WP_013851464.1 337575..338504(+) (amiF) [Streptococcus pasteurianus strain WUSP074]
MTENRKKLVELKNVSLTFNEGKKNEVKAIDNISFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINKGEIDFDGETISHL
KGKELHEFRKNAQMIFQDPQASLNGRMKIRDIVAEGLDIHKLVSSKEERDQKVQDLLALVGLNKDHSTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNHPIHPYTKSLLTAIPEPDPESERNRIHEEYDPSVELDGQPREMREITPGHFVLCTEAEAEAYRKEL

Nucleotide


Download         Length: 930 bp        

>NTDB_id=781677 M0P28_RS01895 WP_013851464.1 337575..338504(+) (amiF) [Streptococcus pasteurianus strain WUSP074]
ATGACTGAAAATAGAAAAAAGCTTGTTGAACTTAAAAATGTATCATTGACTTTTAACGAAGGTAAAAAGAACGAAGTAAA
AGCTATTGATAATATCAGTTTTGATATTTACGAAGGTGAAGTTTTCGGTCTTGTTGGAGAATCAGGTTCTGGTAAGACAA
CCGTTGGTCGTGCTATTTTGAAATTGTACGATATTAATAAAGGTGAAATTGATTTTGATGGTGAAACCATCTCTCACCTT
AAAGGGAAAGAATTGCACGAATTCCGTAAAAATGCTCAAATGATTTTCCAAGACCCACAAGCTAGTCTTAATGGTCGTAT
GAAAATTCGTGACATTGTTGCGGAAGGACTTGACATCCATAAATTAGTTAGCAGTAAAGAAGAGCGTGACCAAAAAGTTC
AAGATTTACTTGCTTTAGTTGGACTTAACAAAGACCATTCAACACGCTATCCACATGAATTTTCAGGTGGACAACGTCAA
CGTATTGGTATCGCTCGTGCTCTTGCCGTTGAACCAAAGTTCATCATTGCCGATGAACCAATTTCAGCCCTTGACGTGTC
AATCCAAGCTCAAGTTGTTAACCTTATGCAAAAACTTCAAAGAGAACAGGGTTTAACATATCTCTTTATCGCTCACGATT
TGTCAATGGTTAAATACATCTCAGATCGTATTGGGGTTATGCACTGGGGTAAAATGCTTGAAATTGGAACATCTGATGAT
GTTTATAATCATCCAATTCACCCATATACTAAGAGCTTGTTGACTGCAATTCCAGAACCAGACCCAGAGTCTGAAAGAAA
TCGTATCCATGAAGAGTATGATCCAAGTGTAGAACTAGATGGCCAACCACGTGAAATGCGTGAAATTACACCTGGACACT
TTGTTCTTTGTACAGAAGCAGAAGCAGAAGCTTATAGAAAAGAATTATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-272)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

55.082

98.706

0.544
  amiF Streptococcus salivarius strain HSISS4

55.082

98.706

0.544
  amiF Streptococcus thermophilus LMG 18311

54.754

98.706

0.54