Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   M0P24_RS03895 Genome accession   NZ_CP116957
Coordinates   770021..771835 (+) Length   604 a.a.
NCBI ID   WP_069788928.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain WUSP070     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 756839..775283 770021..771835 within 0


Gene organization within MGE regions


Location: 756839..775283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0P24_RS03830 (M0P24_03830) - 756839..758044 (+) 1206 WP_013851971.1 CCA tRNA nucleotidyltransferase -
  M0P24_RS03835 (M0P24_03835) - 758041..759912 (+) 1872 WP_248497728.1 ABC-F family ATP-binding cassette domain-containing protein -
  M0P24_RS03840 (M0P24_03840) - 759991..761730 (+) 1740 WP_248497726.1 ABC transporter ATP-binding protein -
  M0P24_RS03845 (M0P24_03845) - 761733..763502 (+) 1770 WP_013851968.1 ABC transporter ATP-binding protein -
  M0P24_RS03850 (M0P24_03850) queC 763753..764406 (+) 654 WP_013851967.1 7-cyano-7-deazaguanine synthase QueC -
  M0P24_RS03855 (M0P24_03855) queD 764406..764852 (+) 447 WP_013851966.1 6-carboxytetrahydropterin synthase QueD -
  M0P24_RS03860 (M0P24_03860) queE 764845..765558 (+) 714 WP_003065269.1 7-carboxy-7-deazaguanine synthase QueE -
  M0P24_RS03865 (M0P24_03865) queF 765571..766062 (+) 492 WP_003065267.1 preQ(1) synthase -
  M0P24_RS03870 (M0P24_03870) - 766118..766615 (-) 498 WP_111718248.1 DUF308 domain-containing protein -
  M0P24_RS03875 (M0P24_03875) gdhA 766861..768210 (+) 1350 WP_003065263.1 NADP-specific glutamate dehydrogenase -
  M0P24_RS03880 (M0P24_03880) - 768487..768996 (+) 510 WP_003065260.1 GNAT family N-acetyltransferase -
  M0P24_RS03885 (M0P24_03885) - 768993..769403 (+) 411 WP_003065257.1 peptide deformylase -
  M0P24_RS03890 (M0P24_03890) rcrR 769577..770017 (+) 441 WP_003065254.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  M0P24_RS03895 (M0P24_03895) rcrP 770021..771835 (+) 1815 WP_069788928.1 ABC transporter ATP-binding protein Regulator
  M0P24_RS03900 (M0P24_03900) rcrQ 771825..773597 (+) 1773 WP_013851965.1 ABC transporter ATP-binding protein Regulator
  M0P24_RS03905 (M0P24_03905) - 773864..774841 (+) 978 WP_013851964.1 alcohol dehydrogenase catalytic domain-containing protein -
  M0P24_RS03910 (M0P24_03910) - 774831..775283 (+) 453 WP_003065246.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence


Protein


Download         Length: 604 a.a.        Molecular weight: 67187.22 Da        Isoelectric Point: 5.9917

>NTDB_id=781616 M0P24_RS03895 WP_069788928.1 770021..771835(+) (rcrP) [Streptococcus pasteurianus strain WUSP070]
MLKILKRLTVKEVTMLIFAVLFVCLNVYLELKIPDYMSDITTLLSTEGTKVKDIFAWNFDAPGMRMVLLSLGSFAASVVV
GFLAARIAASFSTRLRDDIFHSVLNFSDAEIKKFSIPSLLTRTTNDITQIQLVFTMGIQVITKGPIMAIWAITKIADKNH
EWLLVLIVAVAVMFLMIMFLLMMVMPKQRMIQTLTDKLNSITRESLTGIRVVRAYNAEDYQDAKFAQANDNVTNLNLFIG
RSMALLFPVMTGISSGMTLAIYWIGAHLIENIAIPTDPTKIAGAMQDKVDLFSDMVVYSSYAMQVVMGFMMMIVVFFILP
RAVVAAGRINEVLETKSSIEYPETNQAKPTEKGSVEFDNVSFRYSKNSEAVLEHVSFKAKAGDTIAFIGSTGSGKSTLVN
LIPRFYDATEGTIKVDGIDVRQYDHDTLHKIVGYIPQKAVLFSGDIASNMDMGESNSSPLDDDKMWEALDLAQGKTFVEM
KDGKLKAPVAQSGQNFSGGQKQRLAIARALARKPEIIIFDDSFSALDYKTDRILRSQLKERTADMTKLIVAQRISTIMDA
DQILVLDEGKVVGQGTHEELLANNDVYREIAYSQLSKEELENGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=781616 M0P24_RS03895 WP_069788928.1 770021..771835(+) (rcrP) [Streptococcus pasteurianus strain WUSP070]
ATGTTAAAAATTTTGAAACGCTTAACAGTAAAAGAAGTTACGATGCTTATTTTTGCTGTATTATTTGTGTGTTTGAATGT
TTATCTTGAGTTGAAAATTCCAGATTATATGTCGGATATCACAACCTTGCTATCAACAGAGGGAACAAAAGTAAAAGATA
TTTTTGCTTGGAACTTTGATGCGCCAGGGATGCGTATGGTCTTGCTTTCTTTGGGAAGCTTTGCGGCATCCGTCGTTGTC
GGTTTCCTGGCTGCTCGTATTGCGGCAAGTTTTAGTACACGTCTACGTGATGACATTTTCCATAGTGTCTTGAATTTTTC
AGATGCTGAAATCAAGAAATTTTCAATTCCTAGTCTTTTGACACGTACAACCAATGATATTACACAAATTCAATTGGTTT
TCACAATGGGAATCCAAGTCATTACTAAAGGACCTATCATGGCAATTTGGGCAATAACCAAGATTGCTGATAAAAATCAT
GAATGGCTATTGGTTCTTATTGTCGCAGTTGCGGTTATGTTCTTGATGATTATGTTCTTGTTGATGATGGTGATGCCTAA
ACAACGCATGATTCAAACATTAACCGATAAATTGAACAGTATTACGCGAGAATCATTGACAGGTATCCGTGTGGTGCGTG
CATACAATGCCGAAGATTATCAAGATGCCAAATTTGCACAAGCCAATGATAATGTTACCAATCTTAACCTCTTTATTGGA
CGTTCAATGGCGTTGTTATTTCCAGTAATGACAGGAATTTCAAGCGGAATGACACTTGCTATCTACTGGATTGGTGCGCA
TTTGATTGAAAATATTGCCATTCCGACAGATCCAACGAAAATTGCTGGCGCTATGCAAGATAAGGTTGATTTGTTCTCAG
ATATGGTTGTTTATTCATCATATGCCATGCAAGTTGTTATGGGATTCATGATGATGATTGTTGTATTCTTCATTTTACCT
CGTGCTGTTGTTGCTGCTGGGCGTATTAATGAAGTTCTTGAAACAAAATCTTCAATTGAATATCCAGAAACAAATCAAGC
TAAACCAACTGAAAAAGGTTCTGTTGAATTTGACAATGTTTCATTCCGTTACAGCAAAAATTCAGAAGCTGTTTTGGAAC
ACGTTTCCTTTAAAGCGAAAGCTGGAGACACGATTGCCTTTATCGGTTCAACTGGTTCTGGTAAATCAACTTTGGTGAAC
TTGATTCCACGTTTTTATGACGCGACAGAAGGAACGATTAAAGTCGATGGCATTGATGTTCGTCAATATGACCATGATAC
GCTTCATAAGATTGTTGGTTATATTCCGCAAAAAGCAGTGCTTTTCAGTGGGGATATCGCTTCAAATATGGATATGGGAG
AAAGCAATAGTTCGCCACTTGATGATGACAAGATGTGGGAAGCTCTTGATTTAGCTCAAGGTAAGACATTCGTTGAAATG
AAAGACGGTAAGTTAAAAGCACCTGTTGCTCAAAGTGGTCAAAACTTCTCAGGTGGTCAAAAACAACGTTTGGCAATTGC
GCGTGCTCTTGCTCGTAAACCTGAGATTATCATCTTTGATGATTCGTTCTCAGCACTTGACTACAAGACTGACCGAATCC
TTCGTTCACAGTTGAAAGAACGTACAGCTGATATGACGAAATTAATCGTGGCACAACGTATCTCAACGATTATGGACGCT
GACCAAATTTTGGTCTTGGATGAAGGTAAAGTTGTTGGTCAAGGTACGCACGAAGAATTGCTTGCAAACAACGATGTTTA
TCGTGAAATTGCTTACTCACAACTATCTAAGGAGGAATTAGAAAATGGAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

66.446

100

0.666