Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGH   Type   Machinery gene
Locus tag   QZH48_RS10795 Genome accession   NZ_CP129879
Coordinates   2217479..2218417 (-) Length   312 a.a.
NCBI ID   WP_038602246.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain CAB701     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2212479..2223417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZH48_RS10770 (QZH48_10770) frr 2212595..2213152 (-) 558 WP_256293997.1 ribosome recycling factor -
  QZH48_RS10775 (QZH48_10775) pyrH 2213365..2214081 (-) 717 WP_021464089.1 UMP kinase -
  QZH48_RS10780 (QZH48_10780) - 2214166..2214618 (-) 453 WP_012898517.1 hypothetical protein -
  QZH48_RS10785 (QZH48_10785) - 2214752..2215939 (-) 1188 WP_146978269.1 acetate kinase -
  QZH48_RS10790 (QZH48_10790) - 2216096..2217283 (-) 1188 WP_029344484.1 acetate kinase -
  QZH48_RS10795 (QZH48_10795) comGH 2217479..2218417 (-) 939 WP_038602246.1 class I SAM-dependent methyltransferase Machinery gene
  QZH48_RS10800 (QZH48_10800) - 2218505..2218756 (-) 252 WP_038602250.1 DUF3165 family protein -
  QZH48_RS10805 (QZH48_10805) typA 2218857..2220689 (-) 1833 WP_021723473.1 translational GTPase TypA -
  QZH48_RS10810 (QZH48_10810) - 2220877..2221335 (-) 459 WP_038602253.1 hypothetical protein -
  QZH48_RS10815 (QZH48_10815) - 2221337..2221747 (-) 411 WP_235589867.1 hypothetical protein -
  QZH48_RS10820 (QZH48_10820) - 2221754..2222380 (-) 627 WP_033900782.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34812.97 Da        Isoelectric Point: 4.3760

>NTDB_id=781225 QZH48_RS10795 WP_038602246.1 2217479..2218417(-) (comGH) [Lactococcus lactis subsp. lactis strain CAB701]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNAAFLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNAEAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=781225 QZH48_RS10795 WP_038602246.1 2217479..2218417(-) (comGH) [Lactococcus lactis subsp. lactis strain CAB701]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTACTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTTTTTTAGATGATACTGATCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGTTCACAA
GTCGCACCACTTCAACCCAATCATGCTATGACTCCAGATGCAATTGGTTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGTATGGGTAATCTTGCTGAAACGCTTTTGGTTAATCTTAATA
AAAAGGTTGATTATGTGGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCTGACGTTGTTGTTAGTGATTTACCAAT
TGGTTTTTATCCAGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCTTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGGAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGAGGCTAAGGCGATTTATGTTTTGAAAAAGGGACCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGH Streptococcus mutans UA140

48.882

100

0.49
  comGH Streptococcus mutans UA159

48.562

100

0.487