Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   QZH48_RS08210 Genome accession   NZ_CP129879
Coordinates   1743919..1746249 (-) Length   776 a.a.
NCBI ID   WP_301675605.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain CAB701     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1738919..1751249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZH48_RS08180 (QZH48_08180) - 1739506..1740489 (-) 984 WP_269887905.1 LacI family DNA-binding transcriptional regulator -
  QZH48_RS08185 (QZH48_08185) purB 1740623..1741918 (-) 1296 WP_098393343.1 adenylosuccinate lyase -
  QZH48_RS08190 (QZH48_08190) aroD 1742117..1742797 (-) 681 WP_098393342.1 type I 3-dehydroquinate dehydratase -
  QZH48_RS08200 (QZH48_08200) - 1743061..1743264 (-) 204 WP_038602903.1 DUF2969 family protein -
  QZH48_RS08205 (QZH48_08205) trxA 1743508..1743822 (-) 315 WP_003129442.1 thioredoxin -
  QZH48_RS08210 (QZH48_08210) mutS/mutS2 1743919..1746249 (-) 2331 WP_301675605.1 endonuclease MutS2 Machinery gene
  QZH48_RS08215 (QZH48_08215) - 1746294..1746854 (-) 561 WP_003129445.1 CvpA family protein -
  QZH48_RS08220 (QZH48_08220) - 1747014..1747979 (-) 966 WP_038601594.1 NAD(P)/FAD-dependent oxidoreductase -
  QZH48_RS08225 (QZH48_08225) ccpA 1748117..1749115 (-) 999 WP_003129447.1 catabolite control protein A Regulator
  QZH48_RS08230 (QZH48_08230) - 1749330..1750418 (+) 1089 WP_003129448.1 Xaa-Pro peptidase family protein -

Sequence

Protein


Download         Length: 776 a.a.        Molecular weight: 87228.06 Da        Isoelectric Point: 6.8395

>NTDB_id=781203 QZH48_RS08210 WP_301675605.1 1743919..1746249(-) (mutS/mutS2) [Lactococcus lactis subsp. lactis strain CAB701]
MNKKILQILEYDKVKEQFMNALTTAQGQQELKDLKPLTDKEKIQLLFDEVADFRLLTQENGLLNLGKTNDLTEILRRLEL
EASLSGKEFVEIKKVIQLGINIQRFFDEAENVETPSLAITLEKLVDLSALVKKLEIFDNAGSLYDNASLELMHIRASIKS
HQSEIRKIMQEMLTKNLSSLSENVITIRNDRQVLPVKAENKNKISGVVHDMSASGQTLYIEPNAVVSLNNKLNQKRIEER
QEITRIYRDLASQLKPYSFDIRQNAWLIGHIDFVRAKYLYLAANKATLPELTTDKDITLFAARHPLIEAKTVVANDIKFD
AGLNTIVITGPNTGGKTITLKTVGLLTILAQSGLPILAADGSRIHLFDDIFADIGDEQSIEQSLSTFSSHMTNIVHILAQ
ADENSLVLFDELGAGTDPKEGAALAIAILENLRERNVKTMASTHYPELKAYGVETQQVINASMEFNIDKMQPTYHLQLGV
PGRSNALEISRRLGLPETIISVASQQISDSEHDVNQMIEKLEEKTREVIESSRNIKKIERENQSLHKDLTKVYNQINRER
EFELEKAQKEAQEVVKKASLEAQEILKNLNDKAALKPHEIIAARKELEGLAPTIDFSKNKVLKKAKAQRGLKQGAEVNVT
SYGQRGKLIRLEKDGRWTVQMGSITTRLNEDEFEVIESPEQIQAKTKNVSKKVTSKVKAQLDLRGMRYEEAELELDNYID
QALLANLIQITIVHGIGTGVIREMVQKKLQKHRHIKSYEYAPINAGGSGATIAILK

Nucleotide


Download         Length: 2331 bp        

>NTDB_id=781203 QZH48_RS08210 WP_301675605.1 1743919..1746249(-) (mutS/mutS2) [Lactococcus lactis subsp. lactis strain CAB701]
ATGAATAAAAAAATTCTCCAAATATTGGAATATGATAAAGTCAAAGAACAGTTCATGAATGCTTTGACGACAGCGCAGGG
TCAACAAGAATTAAAAGATTTAAAACCTTTGACAGATAAGGAAAAAATTCAGCTCCTTTTTGATGAAGTTGCTGATTTTC
GCTTATTGACCCAAGAAAATGGCCTATTAAATTTAGGAAAAACAAATGATTTAACAGAAATACTCAGACGTCTAGAGCTT
GAAGCCAGTCTTTCAGGCAAGGAATTCGTTGAAATAAAAAAAGTGATTCAATTAGGGATTAATATTCAACGCTTTTTTGA
TGAAGCTGAAAATGTTGAAACACCTTCACTAGCTATTACTTTGGAAAAATTGGTTGATTTATCAGCATTAGTCAAAAAAT
TAGAAATTTTTGATAATGCGGGAAGTCTTTATGATAATGCCAGTCTCGAATTGATGCATATCCGTGCTTCAATCAAGAGT
CACCAATCAGAAATTCGGAAAATCATGCAGGAAATGCTGACCAAAAATCTCTCATCTTTGAGTGAGAATGTCATCACTAT
CCGAAATGACCGACAAGTGCTTCCTGTAAAAGCAGAAAATAAAAATAAAATTTCAGGTGTAGTTCATGATATGTCCGCTT
CAGGTCAAACGCTTTATATTGAGCCAAATGCGGTTGTTTCATTAAATAATAAACTTAATCAAAAGAGAATTGAAGAACGT
CAAGAAATCACAAGAATTTATCGTGACCTTGCTAGTCAATTAAAACCTTATAGCTTTGATATAAGACAAAATGCTTGGCT
GATTGGTCATATTGATTTTGTTCGTGCCAAGTATCTTTATTTAGCAGCGAATAAAGCGACACTTCCAGAATTAACAACCG
ATAAAGATATTACCCTTTTTGCAGCTCGCCATCCTTTGATTGAGGCAAAAACTGTTGTGGCAAATGATATTAAATTTGAT
GCAGGGCTCAATACGATTGTTATTACCGGTCCTAATACGGGTGGGAAGACCATTACTTTGAAAACAGTTGGTTTGTTGAC
AATATTGGCTCAATCAGGTCTGCCAATTTTAGCAGCTGATGGCAGTCGAATTCATCTTTTTGATGATATTTTTGCCGATA
TCGGTGATGAGCAATCCATTGAGCAAAGTTTATCAACTTTCTCAAGTCATATGACTAATATTGTTCATATTTTAGCTCAA
GCAGATGAAAATAGTTTGGTCTTATTTGATGAACTTGGGGCAGGAACTGATCCGAAAGAAGGAGCGGCTCTTGCTATTGC
CATACTGGAAAATTTACGTGAACGAAATGTGAAAACCATGGCAAGTACTCATTATCCTGAGTTAAAAGCTTATGGGGTCG
AAACGCAACAAGTAATCAATGCAAGTATGGAATTTAACATTGATAAGATGCAACCCACTTATCATTTGCAACTGGGAGTG
CCTGGGCGTTCAAATGCCTTGGAGATTTCTAGAAGATTAGGTTTGCCAGAAACTATTATTTCAGTAGCCAGTCAACAAAT
TTCTGACAGTGAGCATGATGTCAATCAGATGATTGAAAAGTTGGAAGAAAAAACGCGTGAAGTGATTGAAAGTTCAAGAA
ATATTAAAAAAATTGAACGAGAAAATCAAAGTTTACATAAAGATTTGACGAAAGTCTATAATCAAATTAACCGCGAGCGC
GAGTTTGAATTAGAAAAAGCACAAAAAGAAGCTCAAGAAGTAGTTAAAAAAGCGAGTCTTGAAGCGCAAGAAATTTTGAA
GAATCTCAATGATAAAGCAGCGTTGAAACCACATGAAATTATTGCTGCTAGAAAAGAACTTGAAGGTTTGGCTCCAACCA
TTGATTTTTCTAAAAATAAGGTTTTGAAAAAAGCGAAAGCACAAAGAGGACTTAAGCAAGGGGCTGAAGTTAATGTCACT
TCTTATGGTCAGCGTGGTAAATTGATTCGTTTAGAAAAAGATGGACGTTGGACAGTTCAAATGGGTTCAATCACGACTCG
TTTAAATGAAGATGAATTTGAAGTGATTGAAAGTCCAGAACAAATTCAAGCCAAAACTAAAAATGTCAGCAAGAAGGTGA
CTTCTAAAGTCAAAGCTCAACTTGATTTACGCGGGATGCGTTATGAAGAAGCAGAACTGGAATTGGATAATTATATTGAC
CAAGCTCTACTTGCAAATTTGATTCAAATTACGATTGTTCATGGGATTGGAACGGGTGTTATTCGAGAAATGGTACAGAA
AAAACTTCAAAAACACCGTCATATTAAATCTTATGAATATGCACCAATTAATGCTGGTGGCTCTGGAGCAACGATTGCTA
TTTTGAAGTAA

Domains

Predicted by InterProScan.

MutS2 and Smr-associated SH3 domain (MSSS)

(634-672)

Smr domain (Smr)

(701-776)

MutS domain V (MutS_V)

(326-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

42.748

100

0.433