Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QY075_RS25365 Genome accession   NZ_CP129688
Coordinates   5422896..5423321 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain PA2818     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5417896..5428321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY075_RS25345 ileS 5418055..5420886 (+) 2832 WP_003094730.1 isoleucine--tRNA ligase -
  QY075_RS25350 lspA 5420879..5421388 (+) 510 WP_003094728.1 signal peptidase II -
  QY075_RS25355 fkpB 5421381..5421821 (+) 441 WP_003094726.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  QY075_RS25360 ispH 5421907..5422851 (+) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QY075_RS25365 comF 5422896..5423321 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  QY075_RS25370 pilY2 5423318..5423665 (-) 348 WP_003094713.1 type 4a fimbrial biogenesis protein PilY2 -
  QY075_RS25375 pilY1 5423667..5427152 (-) 3486 WP_019486630.1 type 4a pilus biogenesis protein PilY1 -
  QY075_RS25380 pilX 5427164..5427751 (-) 588 WP_003094700.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=780915 QY075_RS25365 WP_003094721.1 5422896..5423321(-) (comF) [Pseudomonas aeruginosa strain PA2818]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=780915 QY075_RS25365 WP_003094721.1 5422896..5423321(-) (comF) [Pseudomonas aeruginosa strain PA2818]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATTCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCAGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACACCCACCAGCACTACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383