Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   QY075_RS22640 Genome accession   NZ_CP129688
Coordinates   4815881..4816477 (+) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain PA2818     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4810881..4821477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY075_RS22630 - 4812161..4814632 (-) 2472 WP_019484455.1 penicillin-binding protein 1A -
  QY075_RS22635 pilM 4814817..4815881 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  QY075_RS22640 pilN 4815881..4816477 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  QY075_RS22645 pilO 4816474..4817097 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  QY075_RS22650 comL/pilP 4817094..4817618 (+) 525 WP_034085786.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  QY075_RS22655 pilQ 4817672..4819816 (+) 2145 WP_015503770.1 type 4a pilus secretin PilQ Machinery gene
  QY075_RS22660 aroK 4819828..4820346 (+) 519 WP_003095833.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=780907 QY075_RS22640 WP_003095839.1 4815881..4816477(+) (pilN) [Pseudomonas aeruginosa strain PA2818]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=780907 QY075_RS22640 WP_003095839.1 4815881..4816477(+) (pilN) [Pseudomonas aeruginosa strain PA2818]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369