Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QY069_RS07485 Genome accession   NZ_CP129687
Coordinates   1524981..1525406 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain PA2209     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1519981..1530406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY069_RS07470 pilX 1520545..1521132 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  QY069_RS07475 pilY1 1521144..1524635 (+) 3492 WP_010793785.1 type 4a pilus biogenesis protein PilY1 -
  QY069_RS07480 pilY2 1524637..1524984 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  QY069_RS07485 comF 1524981..1525406 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  QY069_RS07490 ispH 1525453..1526397 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QY069_RS07495 fkpB 1526483..1526923 (-) 441 WP_003161775.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  QY069_RS07500 lspA 1526916..1527425 (-) 510 WP_003102615.1 signal peptidase II -
  QY069_RS07505 ileS 1527418..1530249 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=780774 QY069_RS07485 WP_003094721.1 1524981..1525406(+) (comF) [Pseudomonas aeruginosa strain PA2209]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=780774 QY069_RS07485 WP_003094721.1 1524981..1525406(+) (comF) [Pseudomonas aeruginosa strain PA2209]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383