Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   PPM45_RS08495 Genome accession   NZ_CP116870
Coordinates   1635400..1636179 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis subsp. subtilis strain Master_strain     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1630400..1641179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM45_RS08475 trmFO 1631093..1632400 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  PPM45_RS08480 xerC 1632468..1633382 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  PPM45_RS08485 clpQ 1633395..1633940 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  PPM45_RS08490 hslU 1633957..1635360 (+) 1404 WP_003245556.1 HslU--HslV peptidase ATPase subunit -
  PPM45_RS08495 codY 1635400..1636179 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  PPM45_RS08500 flgB 1636559..1636948 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  PPM45_RS08505 flgC 1636948..1637400 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  PPM45_RS08510 fliE 1637411..1637731 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  PPM45_RS08515 fliF 1637777..1639387 (+) 1611 WP_010886506.1 flagellar basal-body MS-ring/collar protein FliF -
  PPM45_RS08520 fliG 1639400..1640416 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  PPM45_RS08525 fliH 1640409..1641161 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=780709 PPM45_RS08495 WP_003220850.1 1635400..1636179(+) (codY) [Bacillus subtilis subsp. subtilis strain Master_strain]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=780709 PPM45_RS08495 WP_003220850.1 1635400..1636179(+) (codY) [Bacillus subtilis subsp. subtilis strain Master_strain]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467