Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   PPM34_RS07845 Genome accession   NZ_CP116869
Coordinates   1507249..1508028 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis subsp. subtilis strain MGP001     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1502249..1513028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM34_RS07825 trmFO 1502942..1504249 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  PPM34_RS07830 xerC 1504317..1505231 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  PPM34_RS07835 clpQ 1505244..1505789 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  PPM34_RS07840 hslU 1505806..1507209 (+) 1404 WP_003245556.1 HslU--HslV peptidase ATPase subunit -
  PPM34_RS07845 codY 1507249..1508028 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  PPM34_RS07850 flgB 1508408..1508797 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  PPM34_RS07855 flgC 1508797..1509249 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  PPM34_RS07860 fliE 1509260..1509580 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  PPM34_RS07865 fliF 1509626..1511236 (+) 1611 WP_010886506.1 flagellar basal-body MS-ring/collar protein FliF -
  PPM34_RS07870 fliG 1511249..1512265 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  PPM34_RS07875 fliH 1512258..1513010 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=780624 PPM34_RS07845 WP_003220850.1 1507249..1508028(+) (codY) [Bacillus subtilis subsp. subtilis strain MGP001]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=780624 PPM34_RS07845 WP_003220850.1 1507249..1508028(+) (codY) [Bacillus subtilis subsp. subtilis strain MGP001]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467