Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   PPM66_RS07825 Genome accession   NZ_CP116867
Coordinates   1504718..1505497 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis subsp. subtilis strain MGP008     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1499718..1510497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM66_RS07805 trmFO 1500411..1501718 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  PPM66_RS07810 xerC 1501786..1502700 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  PPM66_RS07815 clpQ 1502713..1503258 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  PPM66_RS07820 hslU 1503275..1504678 (+) 1404 WP_003245556.1 HslU--HslV peptidase ATPase subunit -
  PPM66_RS07825 codY 1504718..1505497 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  PPM66_RS07830 flgB 1505877..1506266 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  PPM66_RS07835 flgC 1506266..1506718 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  PPM66_RS07840 fliE 1506729..1507049 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  PPM66_RS07845 fliF 1507095..1508705 (+) 1611 WP_010886506.1 flagellar basal-body MS-ring/collar protein FliF -
  PPM66_RS07850 fliG 1508718..1509734 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  PPM66_RS07855 fliH 1509727..1510479 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=780456 PPM66_RS07825 WP_003220850.1 1504718..1505497(+) (codY) [Bacillus subtilis subsp. subtilis strain MGP008]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=780456 PPM66_RS07825 WP_003220850.1 1504718..1505497(+) (codY) [Bacillus subtilis subsp. subtilis strain MGP008]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467