Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   PN942_RS03160 Genome accession   NZ_CP116807
Coordinates   626028..628400 (-) Length   790 a.a.
NCBI ID   WP_016998513.1    Uniprot ID   -
Organism   Mammaliicoccus lentus strain PVZ.22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 621028..633400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PN942_RS03140 (PN942_03135) - 622063..622368 (-) 306 WP_016998517.1 DUF1292 domain-containing protein -
  PN942_RS03145 (PN942_03140) ruvX 622391..622819 (-) 429 WP_016998516.1 Holliday junction resolvase RuvX -
  PN942_RS03150 (PN942_03145) - 622812..623081 (-) 270 WP_016998515.1 IreB family regulatory phosphoprotein -
  PN942_RS03155 (PN942_03150) alaS 623149..625779 (-) 2631 WP_064204506.1 alanine--tRNA ligase -
  PN942_RS03160 (PN942_03155) recD2 626028..628400 (-) 2373 WP_016998513.1 ATP-dependent RecD-like DNA helicase Machinery gene
  PN942_RS03165 (PN942_03160) - 628403..629068 (-) 666 WP_064204505.1 tetratricopeptide repeat protein -
  PN942_RS03170 (PN942_03165) mnmA 629156..630265 (-) 1110 WP_064204504.1 tRNA 2-thiouridine(34) synthase MnmA -
  PN942_RS03175 (PN942_03170) - 630258..631406 (-) 1149 WP_135031076.1 cysteine desulfurase family protein -
  PN942_RS03180 (PN942_03175) sal(B) 631466..633091 (-) 1626 WP_282461103.1 ABC-F type ribosomal protection protein Sal(B) -

Sequence

Protein


Download         Length: 790 a.a.        Molecular weight: 89889.16 Da        Isoelectric Point: 4.6379

>NTDB_id=780353 PN942_RS03160 WP_016998513.1 626028..628400(-) (recD2) [Mammaliicoccus lentus strain PVZ.22]
MENLSLFDLSHVKGEVIRILFQNSDNYYTVIKVDVMDSNEDFDHEVTIVGYFPQIVEGETYLFKGKVIEHPKYGKQLQAD
TFEKELPQTKQGVIHYLSSDLFKGIGKKTAETIVNKLGENALQKILDDPDVLEEIPKLNKQKRSTIVESIRENQAIERIM
IKLNELGFGPKLAMSIYQTYKEETMNIIKQSPYRLVMDINGIGFQRADQIAEQIGISKDHNERVVAGVNYYLDQQSLQNG
HTFLPIDILINGAYELLNHNQPEVVAKEQINDVIVEMSEESKIIIEDNNCFMPSLYYSEAKSVQIMHRLYQHQEDLKEIE
KSDLQLHIGEIEDMNDVSYAEGQKNALETAINNKMMLLTGGPGTGKTTVIRGICELYSEIHGVSLDYDDYQEGTDFPIVL
AAPTGRAAKRLSESTGLEAMTIHRLIGWSKDTQPDDVLDNDIHAHLIILDEMSMVDTWLMYQFLRAVPDYAQIIFVGDED
QLPSVGPGQIFKDLIDSKVIPRVNLTEVYRQQEGSSIIDLAHKIKNNIPVSINEKHHDRSFISCNSNQIASVVEKVVQGA
VKKGYNMQDIQVLAPIYRGPAGINKLNQLLQDILNPKTEETRFLQYGEVEYREQDKVLQLINRPDDNVFNGDIGVVIGVY
KAEENALGKDVIIVDYEGNEITYTKQDLSEVTHAYCCSIHKSQGSEFPIVIMPIVRQYFRMLQKNILYTGLTRAKQSLVV
CGEENAFNQGIKTLGNGRMTSFDTKLKLYFSNDDTEEPTEIKNLILTEENMYEVDPMINMQNKTPYDFMK

Nucleotide


Download         Length: 2373 bp        

>NTDB_id=780353 PN942_RS03160 WP_016998513.1 626028..628400(-) (recD2) [Mammaliicoccus lentus strain PVZ.22]
TTGGAAAATTTATCTTTATTTGATCTTTCACATGTTAAAGGTGAAGTTATTAGAATATTATTTCAAAATAGTGATAACTA
TTACACTGTTATAAAAGTTGATGTGATGGATTCAAATGAAGATTTTGACCATGAAGTCACTATAGTAGGGTACTTTCCTC
AAATTGTAGAAGGTGAAACTTATCTTTTTAAAGGTAAGGTTATTGAACATCCTAAATATGGAAAGCAACTTCAAGCTGAC
ACTTTCGAGAAAGAATTACCTCAAACGAAACAAGGTGTCATTCATTATTTGTCCAGTGATTTATTTAAAGGAATAGGTAA
GAAAACTGCAGAGACAATCGTCAATAAATTGGGTGAAAATGCACTACAAAAAATATTGGATGATCCAGATGTATTAGAAG
AAATACCTAAATTAAACAAACAAAAACGTAGTACTATAGTAGAATCTATAAGAGAAAATCAAGCGATAGAACGCATAATG
ATAAAGTTAAATGAATTAGGGTTTGGACCTAAACTAGCCATGAGTATTTATCAAACGTATAAAGAAGAAACAATGAACAT
CATAAAACAGTCTCCTTATCGATTAGTTATGGATATAAATGGTATTGGTTTTCAAAGAGCAGACCAAATCGCTGAACAAA
TTGGTATTTCAAAAGACCATAATGAACGTGTTGTGGCGGGTGTGAATTACTATTTAGATCAGCAATCGTTACAAAACGGT
CATACATTTTTACCGATTGATATTTTAATCAATGGTGCATATGAATTATTAAATCATAACCAACCTGAAGTTGTAGCAAA
AGAGCAAATTAATGATGTTATCGTTGAGATGAGTGAAGAAAGTAAAATTATAATAGAAGACAATAATTGTTTCATGCCAT
CTTTATATTACTCAGAAGCTAAAAGTGTTCAAATTATGCATAGATTGTATCAACACCAAGAAGATTTAAAAGAAATTGAA
AAAAGTGATTTACAACTTCATATTGGTGAAATAGAAGACATGAATGACGTTTCTTATGCTGAAGGGCAGAAGAATGCACT
CGAAACAGCCATCAATAATAAAATGATGTTATTAACAGGTGGTCCTGGTACAGGTAAGACGACTGTTATAAGAGGAATAT
GTGAGCTATATTCTGAAATTCATGGCGTTAGTTTAGATTATGATGATTATCAAGAAGGAACTGATTTTCCAATAGTTTTA
GCAGCTCCAACAGGAAGAGCAGCTAAAAGATTAAGTGAATCAACTGGTTTAGAAGCCATGACTATCCATAGATTGATAGG
TTGGAGTAAAGATACTCAACCTGATGATGTATTAGATAATGATATACATGCTCATTTAATTATATTGGATGAAATGTCTA
TGGTTGATACATGGTTAATGTACCAATTTTTAAGAGCAGTACCTGATTATGCGCAAATTATTTTTGTAGGTGATGAAGAT
CAATTACCTTCAGTTGGGCCTGGTCAAATATTCAAAGATTTAATTGATTCAAAAGTCATTCCACGTGTGAACTTAACAGA
AGTATATAGGCAACAAGAAGGTTCATCAATCATTGATTTAGCACATAAAATAAAAAATAATATTCCAGTTTCTATTAATG
AAAAACATCATGACCGCTCATTTATCAGTTGTAACAGTAACCAAATTGCTTCAGTCGTTGAAAAAGTTGTTCAAGGTGCA
GTTAAAAAAGGATATAATATGCAAGATATTCAAGTTCTTGCGCCAATATATCGTGGTCCAGCAGGTATCAATAAGTTAAA
TCAATTACTTCAAGACATTTTAAATCCTAAAACTGAAGAAACAAGGTTTTTACAATACGGTGAAGTAGAGTATCGTGAAC
AGGATAAAGTACTACAGCTTATTAATAGACCGGACGATAACGTGTTTAATGGTGATATTGGTGTTGTTATAGGCGTATAT
AAAGCTGAAGAAAATGCTTTAGGGAAAGATGTTATTATCGTTGATTATGAGGGAAATGAAATAACTTACACGAAACAAGA
TTTATCAGAGGTTACACATGCATATTGTTGTTCAATTCATAAATCACAAGGCTCGGAATTTCCGATTGTTATCATGCCTA
TTGTTAGACAATACTTTAGAATGTTACAGAAAAACATTTTATATACTGGTTTAACAAGAGCAAAACAGTCTTTAGTTGTC
TGTGGTGAGGAAAATGCTTTTAATCAAGGTATTAAAACATTAGGAAATGGACGTATGACGTCTTTCGATACAAAACTTAA
ACTGTATTTTAGTAATGATGATACAGAGGAACCAACTGAAATCAAAAATTTGATACTGACAGAAGAAAATATGTATGAAG
TTGATCCAATGATAAACATGCAAAATAAAACACCTTATGATTTCATGAAATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-721)

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)

AAA domain (AAA_30)

(339-546)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-644)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.252

100

0.505