Detailed information NTG0780227

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PKO50_RS25940
• Genome accession: NZ_CP116775
• Coordinates: 5688524..5689396 (+)
• Length: 290 a.a.
• NCBI ID: WP_275627641.1
• Uniprot ID: -
• Organism: Pseudomonas sp. 273
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5683524..5694396

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PKO50_RS25925	pilA/pilAI	5684969..5685370 (-)	402	WP_275627638.1	pilin	Machinery gene
PKO50_RS25930	pilB	5685597..5687300 (+)	1704	WP_275627639.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PKO50_RS25935	pilC	5687304..5688521 (+)	1218	WP_275627640.1	type II secretion system F family protein	Machinery gene
PKO50_RS25940	pilD	5688524..5689396 (+)	873	WP_275627641.1	A24 family peptidase	Machinery gene
PKO50_RS25945	coaE	5689466..5690074 (+)	609	WP_089390517.1	dephospho-CoA kinase	-
PKO50_RS25950	yacG	5690071..5690280 (+)	210	WP_089390516.1	DNA gyrase inhibitor YacG	-
PKO50_RS25955	-	5690733..5690972 (+)	240	WP_275627642.1	ribbon-helix-helix domain-containing protein	-
PKO50_RS25960	-	5690972..5691061 (+)	90	Protein_5137	PIN domain nuclease	-
PKO50_RS25965	-	5691373..5691588 (-)	216	WP_275627643.1	hypothetical protein	-
PKO50_RS25970	-	5691696..5692412 (-)	717	WP_275627644.1	energy-coupling factor ABC transporter permease	-
PKO50_RS25975	-	5692409..5692879 (-)	471	WP_109934231.1	FAD/FMN-containing dehydrogenase	-
PKO50_RS25980	-	5692882..5693298 (-)	417	WP_275627645.1	GNAT family N-acetyltransferase	-
PKO50_RS25985	-	5693431..5694060 (+)	630	WP_089390510.1	DUF1780 domain-containing protein	-
PKO50_RS25990	-	5694130..5694303 (+)	174	WP_009617611.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31983.92 Da
• Isoelectric Point: 6.8226

>NTDB_id=780227 PKO50_RS25940 WP_275627641.1 5688524..5689396(+) (pilD) [Pseudomonas sp. 273]
MPVLDFLASHVLAFVLCAALLGLLIGSFLNVVIHRLPKMMELEWQQQARDALSLPQPEQKATYNLVLPNSQCPHCGHEIH
AWENIPVVSYLALRGRCSACKAPISARYPLVELATALLSGFVAWHFGFTWQAGAMLLLTWGLLAMSLIDVDHQLLPDALV
LPLLWLGLIVNYFGLFTSLGDALWGAVFGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILFSSLVG
AVLGVILLRLRNAETGTPIPFGPYLAIAGWIALLWGDQITTTYLQFAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=780227 PKO50_RS25940 WP_275627641.1 5688524..5689396(+) (pilD) [Pseudomonas sp. 273]
ATGCCTGTACTCGACTTCCTGGCCAGCCACGTGCTGGCCTTTGTTTTATGCGCCGCCCTCCTCGGCCTGCTGATTGGCAG
CTTCCTCAACGTGGTCATCCACCGCCTGCCGAAGATGATGGAGCTGGAATGGCAGCAGCAGGCGCGGGATGCGCTTTCCC
TGCCCCAGCCCGAGCAGAAGGCCACCTACAACCTGGTCCTGCCCAACTCCCAGTGCCCACATTGCGGCCATGAGATCCAT
GCCTGGGAGAACATCCCCGTGGTCAGCTACCTGGCCCTGCGCGGCAGGTGCTCGGCCTGCAAGGCGCCGATCAGTGCGCG
TTATCCGCTGGTCGAGCTGGCCACCGCCCTGCTCTCCGGCTTCGTTGCCTGGCACTTCGGCTTTACCTGGCAGGCCGGGG
CCATGCTGTTGCTGACCTGGGGGCTGCTGGCCATGAGCCTGATCGACGTCGACCACCAGTTGCTGCCGGATGCGCTGGTC
CTGCCGCTGCTCTGGCTGGGGTTGATCGTCAATTACTTCGGGCTTTTCACCAGCCTGGGCGATGCGCTCTGGGGGGCGGT
GTTCGGTTACCTGAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGCTATGGCGACT
TCAAGTTGCTGGCCATGCTCGGCGCCTGGGGCGGCTGGCAGGTGTTGCCGCTGACCATCCTGTTCTCGTCCCTGGTCGGG
GCCGTGCTGGGCGTCATTCTGCTGCGCCTGCGCAACGCCGAGACCGGCACGCCGATCCCCTTCGGGCCCTATCTGGCCAT
CGCCGGCTGGATTGCGCTGCTCTGGGGTGATCAAATAACCACTACCTATCTGCAGTTCGCCGGCTTCCGGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	58.123	95.517	0.555
pilD	Vibrio campbellii strain DS40M4	55.678	94.138	0.524
pilD	Acinetobacter baumannii D1279779	52.982	98.276	0.521
pilD	Acinetobacter nosocomialis M2	52.632	98.276	0.517
pilD	Neisseria gonorrhoeae MS11	50.19	90.69	0.455