Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BLGA_RS09300 Genome accession   NZ_AP022379
Coordinates   2122714..2124543 (-) Length   609 a.a.
NCBI ID   WP_119107289.1    Uniprot ID   -
Organism   Bifidobacterium longum subsp. longum strain JCM 7052     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2114286..2139145 2122714..2124543 within 0


Gene organization within MGE regions


Location: 2114286..2139145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLGA_RS09260 (BLGA_18260) metG 2115215..2117080 (-) 1866 WP_032684160.1 methionine--tRNA ligase -
  BLGA_RS09265 (BLGA_18270) - 2117397..2118044 (+) 648 WP_007052934.1 hypothetical protein -
  BLGA_RS10050 - 2118035..2118412 (+) 378 WP_007052935.1 hypothetical protein -
  BLGA_RS09275 (BLGA_18290) rsmI 2118439..2119449 (-) 1011 WP_008783206.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BLGA_RS09290 (BLGA_18300) - 2120029..2121447 (-) 1419 WP_011068650.1 MFS transporter -
  BLGA_RS09295 (BLGA_18310) - 2121529..2122575 (+) 1047 WP_007052939.1 FAD:protein FMN transferase -
  BLGA_RS09300 (BLGA_18320) rcrQ 2122714..2124543 (-) 1830 WP_119107289.1 ABC transporter ATP-binding protein Regulator
  BLGA_RS09305 (BLGA_18330) rcrP 2124700..2126571 (-) 1872 WP_011068647.1 ABC transporter ATP-binding protein Regulator
  BLGA_RS09310 (BLGA_18340) - 2126823..2127353 (-) 531 WP_011068645.1 MarR family transcriptional regulator -
  BLGA_RS09315 (BLGA_18350) - 2127715..2128278 (+) 564 WP_007055052.1 BRO family protein -
  BLGA_RS09320 (BLGA_18370) - 2128774..2132610 (-) 3837 WP_065454662.1 bacterial Ig-like domain-containing protein -
  BLGA_RS09325 (BLGA_18380) - 2132822..2137363 (-) 4542 WP_119107290.1 exo-beta-1,6-galactobiohydrolase -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 66579.90 Da        Isoelectric Point: 5.9863

>NTDB_id=78022 BLGA_RS09300 WP_119107289.1 2122714..2124543(-) (rcrQ) [Bifidobacterium longum subsp. longum strain JCM 7052]
MPRGPMGGGRTTEKPNDFGKVMGKLVNYCRNYLPVIIIALILGAAGTVCQIVGPDKLKDMTNEIVKGLPAIVNGRPVMNS
VDFGTVGHIAWTLVALYVGYAVLGYVQSWMMANVTQRTAQRLRESISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSVTLFVGALVMMFYNNVIMTLCAIGASLIGLIIMMAIMKSSQKYFARQQMALGDVNGHVEEMYAGHLIVK
AYNGEADSIRRFEKYNSDLYESGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALALDGQIEFGVIVAFMMYVRLFTQPL
AQFAQAFQNLQRCAAAAERVFGFLEEPEMEDESGKSALLGTNGHEVKGDVEFSHVQFGYEPGKPIIHDFSASVKAGQKVA
IVGPTGAGKTTMVNLLMRFYEISGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPGVTDKQIEDAC
KAVGLDHFIRSLPDGYDTVLDDKSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTSFVI
AHRLSTIRDADMILVMNHGDVIERGTHDELLAAGGFYADLYNSQFALAD

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=78022 BLGA_RS09300 WP_119107289.1 2122714..2124543(-) (rcrQ) [Bifidobacterium longum subsp. longum strain JCM 7052]
ATGCCAAGAGGACCAATGGGCGGTGGGCGCACCACCGAAAAGCCCAACGACTTCGGCAAAGTCATGGGCAAGCTCGTGAA
CTACTGCCGCAACTATCTTCCCGTCATCATCATCGCGCTCATCCTGGGCGCGGCCGGCACCGTCTGCCAGATCGTCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCGTCAAAGGTCTGCCCGCCATCGTTAACGGCAGACCGGTGATGAACTCG
GTAGATTTCGGCACGGTGGGCCACATCGCCTGGACTTTGGTGGCCCTGTACGTGGGCTACGCCGTGCTCGGCTACGTGCA
AAGCTGGATGATGGCCAACGTCACCCAGCGCACCGCCCAGCGACTGCGCGAGTCCATCTCGGTCAAAATCAACAAACTGC
CGCTCAAATACTTCGACAAGGTTAGCTACGGCGACGTGCTGTCGCGCATAACCAACGATGTGGACGCCATCGGCCAGACG
CTGGGCCAGTCGCTCGGCTCGCTGATTACCTCGGTGACGCTGTTCGTGGGCGCGCTGGTGATGATGTTCTACAACAACGT
GATCATGACCCTGTGCGCCATCGGTGCCAGCCTCATCGGCCTGATCATCATGATGGCCATCATGAAGTCCTCCCAGAAGT
ACTTCGCCCGGCAGCAGATGGCGCTGGGTGACGTCAACGGCCACGTGGAGGAGATGTACGCCGGTCACCTCATCGTCAAG
GCATACAACGGCGAGGCCGATTCGATTCGTCGCTTCGAGAAGTACAACTCGGACCTCTACGAGTCCGGCTGGAAGTCGCA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAATTTCGTGGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTGGGCGCGG
CGCTCGCGCTCGACGGGCAGATCGAGTTCGGCGTGATCGTGGCGTTCATGATGTATGTCCGCCTGTTCACCCAGCCGTTG
GCGCAGTTCGCCCAGGCCTTCCAGAACCTGCAGCGTTGCGCGGCGGCCGCCGAACGCGTGTTCGGCTTCCTTGAGGAGCC
GGAGATGGAGGACGAATCCGGCAAGTCCGCTTTGCTTGGGACCAACGGCCACGAAGTGAAGGGCGACGTGGAATTCAGCC
ACGTACAGTTCGGCTACGAACCGGGCAAGCCGATCATCCACGACTTCTCCGCCTCCGTCAAGGCCGGGCAGAAGGTCGCC
ATCGTCGGCCCGACCGGTGCCGGCAAGACCACCATGGTCAACCTGCTCATGCGCTTCTATGAGATTTCCGGCGGCTCGAT
CGCGATTGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCCATGGTGCTGCAGGATACGT
GGGTGTTCCGCGGCACTGTGCGCGAGAACATCGCCTACTCCAAGCCCGGCGTGACCGACAAGCAGATCGAGGATGCGTGC
AAGGCCGTGGGCCTCGACCACTTCATCCGCTCGCTGCCGGACGGCTATGACACCGTGCTCGACGACAAGTCGTCGCTCTC
CCAGGGCCAGAAGCAGCTGCTCACCATCGCCCGTGCGATGGTGCAGGACGCGCCGATTCTGATTCTCGACGAGGCCACCT
CATCGGTCGATACCCGCACCGAAGAGCTGATCCAGAAGGCCATGGACGCGCTGACCGTGGGGCGTACGAGCTTTGTGATC
GCGCACCGCCTCTCCACGATTCGCGACGCCGACATGATTCTCGTCATGAACCACGGCGACGTGATCGAGCGCGGCACGCA
CGACGAGCTGCTGGCGGCGGGCGGCTTCTACGCCGACCTGTACAACAGCCAGTTCGCACTCGCTGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-320)

ABC transporter (ABC_tran)

(387-534)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.237

96.88

0.525

Multiple sequence alignment