Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QYT28_RS13540 Genome accession   NZ_CP129556
Coordinates   2746304..2746900 (+) Length   198 a.a.
NCBI ID   WP_000559156.1    Uniprot ID   Q8NY07
Organism   Staphylococcus aureus strain 137G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2741304..2751900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYT28_RS13510 (QYT28_13490) treR 2742231..2742959 (+) 729 WP_001118676.1 trehalose operon repressor -
  QYT28_RS13520 (QYT28_13500) - 2743360..2743461 (+) 102 WP_001791573.1 hypothetical protein -
  QYT28_RS13525 (QYT28_13505) - 2743600..2744124 (+) 525 WP_001167834.1 GNAT family N-acetyltransferase -
  QYT28_RS13530 (QYT28_13510) dnaX 2744193..2745890 (+) 1698 WP_001109044.1 DNA polymerase III subunit gamma/tau -
  QYT28_RS13535 (QYT28_13515) - 2745980..2746297 (+) 318 WP_001213992.1 YbaB/EbfC family nucleoid-associated protein -
  QYT28_RS13540 (QYT28_13520) recR 2746304..2746900 (+) 597 WP_000559156.1 recombination mediator RecR Machinery gene
  QYT28_RS13545 (QYT28_13525) - 2747242..2747310 (+) 69 WP_370458382.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22099.51 Da        Isoelectric Point: 4.7564

>NTDB_id=780184 QYT28_RS13540 WP_000559156.1 2746304..2746900(+) (recR) [Staphylococcus aureus strain 137G]
MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDRS
VICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKNDEVSELILAMNPNLEGESTAMYISRLV
KPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM

Nucleotide


Download         Length: 597 bp        

>NTDB_id=780184 QYT28_RS13540 WP_000559156.1 2746304..2746900(+) (recR) [Staphylococcus aureus strain 137G]
ATGCATTATCCAGAACCTATATCAAAGCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACG
TCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAAAGAGAAT
TAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAGCAAAGAGATCGTTCA
GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATACAAAGGTTTATATCACGTTTT
ACATGGGTCTATTTCGCCTATGGATGGAATTGGACCAGAAGATATTAATATTCCTTCATTGATTGAACGCTTGAAAAACG
ATGAAGTTAGCGAATTAATCTTAGCTATGAACCCGAACTTAGAGGGGGAATCTACAGCCATGTATATTTCTAGATTAGTT
AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGGTTATCTGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAAC
ATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8NY07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

77.273

100

0.773
  recR Streptococcus pneumoniae R6

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475