Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   PNF30_RS11345 Genome accession   NZ_CP116774
Coordinates   2211605..2212384 (-) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus safensis strain SRCM125915     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2206605..2217384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF30_RS11315 (PNF30_11315) fliH 2206719..2207483 (-) 765 WP_272510182.1 flagellar assembly protein FliH -
  PNF30_RS11320 (PNF30_11320) fliG 2207476..2208492 (-) 1017 WP_034281776.1 flagellar motor switch protein FliG -
  PNF30_RS11325 (PNF30_11325) fliF 2208504..2210096 (-) 1593 WP_095408476.1 flagellar basal-body MS-ring/collar protein FliF -
  PNF30_RS11330 (PNF30_11330) fliE 2210146..2210463 (-) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  PNF30_RS11335 (PNF30_11335) flgC 2210475..2210927 (-) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  PNF30_RS11340 (PNF30_11340) flgB 2210927..2211316 (-) 390 WP_039178512.1 flagellar basal body rod protein FlgB -
  PNF30_RS11345 (PNF30_11345) codY 2211605..2212384 (-) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  PNF30_RS11350 (PNF30_11350) hslU 2212419..2213819 (-) 1401 WP_197197844.1 HslU--HslV peptidase ATPase subunit -
  PNF30_RS11355 (PNF30_11355) hslV 2213836..2214381 (-) 546 WP_095408474.1 ATP-dependent protease subunit HslV -
  PNF30_RS11360 (PNF30_11360) xerC 2214396..2215313 (-) 918 WP_205185012.1 tyrosine recombinase XerC -
  PNF30_RS11365 (PNF30_11365) trmFO 2215376..2216680 (-) 1305 WP_034317774.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=780184 PNF30_RS11345 WP_007499612.1 2211605..2212384(-) (codY) [Bacillus safensis strain SRCM125915]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=780184 PNF30_RS11345 WP_007499612.1 2211605..2212384(-) (codY) [Bacillus safensis strain SRCM125915]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTCAAAGAAAT
GGCAGAAACACTCAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGGGGAAAGCTTCTTGGCTATTCCATTA
ATCAACAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTCCCGATTGAAAACCGTGACTTATTCCA
ATCAGGTTTAACAACAATTGTTCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGAGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTCCAAATGGCCATTAGCTCTCTTTCATACAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTGGATGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATTGCAGACCGTGTAGGGATCACTC
GTTCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTAATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471