Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QYT32_RS03370 Genome accession   NZ_CP129553
Coordinates   681404..682177 (-) Length   257 a.a.
NCBI ID   WP_123090109.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 704D     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 676404..687177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYT32_RS03335 (QYT32_03335) - 676657..677427 (-) 771 WP_000473705.1 isoprenyl transferase -
  QYT32_RS03340 (QYT32_03340) frr 677800..678354 (-) 555 WP_001280006.1 ribosome recycling factor -
  QYT32_RS03345 (QYT32_03345) pyrH 678373..679095 (-) 723 WP_000057330.1 UMP kinase -
  QYT32_RS03350 (QYT32_03350) tsf 679232..680113 (-) 882 WP_000201387.1 translation elongation factor Ts -
  QYT32_RS03355 (QYT32_03355) - 680148..680261 (-) 114 WP_001791405.1 hypothetical protein -
  QYT32_RS03360 (QYT32_03360) rpsB 680295..681062 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  QYT32_RS03365 (QYT32_03365) - 681261..681353 (-) 93 WP_031788481.1 hypothetical protein -
  QYT32_RS03370 (QYT32_03370) codY 681404..682177 (-) 774 WP_123090109.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QYT32_RS03375 (QYT32_03375) hslU 682202..683605 (-) 1404 WP_000379051.1 ATP-dependent protease ATPase subunit HslU -
  QYT32_RS03380 (QYT32_03380) hslV 683671..684216 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  QYT32_RS03385 (QYT32_03385) xerC 684213..685109 (-) 897 WP_001015609.1 tyrosine recombinase XerC -
  QYT32_RS03390 (QYT32_03390) trmFO 685527..686834 (-) 1308 WP_000195249.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28683.07 Da        Isoelectric Point: 6.3668

>NTDB_id=779962 QYT32_RS03370 WP_123090109.1 681404..682177(-) (codY) [Staphylococcus aureus strain 704D]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDGLEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=779962 QYT32_RS03370 WP_123090109.1 681404..682177(-) (codY) [Staphylococcus aureus strain 704D]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGCGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACACGATG
ACTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACAGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGGATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428