Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   QY866_RS09700 Genome accession   NZ_CP129530
Coordinates   1897183..1899546 (-) Length   787 a.a.
NCBI ID   WP_011374102.1    Uniprot ID   Q38YN3
Organism   Latilactobacillus sakei strain A1262     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1892183..1904546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY866_RS09675 (QY866_09665) dltC 1893365..1893601 (-) 237 WP_011374106.1 D-alanine--poly(phosphoribitol) ligase subunit DltC -
  QY866_RS09680 (QY866_09670) dltB 1893631..1894839 (-) 1209 WP_011374105.1 D-alanyl-lipoteichoic acid biosynthesis protein DltB -
  QY866_RS09685 (QY866_09675) dltA 1894832..1896358 (-) 1527 WP_041821006.1 D-alanine--poly(phosphoribitol) ligase subunit DltA -
  QY866_RS09690 (QY866_09680) - 1896382..1896531 (-) 150 WP_035144601.1 teichoic acid D-Ala incorporation-associated protein DltX -
  QY866_RS09695 (QY866_09685) trxA 1896732..1897043 (-) 312 WP_011374103.1 thioredoxin -
  QY866_RS09700 (QY866_09690) mutS/mutS2 1897183..1899546 (-) 2364 WP_011374102.1 endonuclease MutS2 Machinery gene
  QY866_RS09705 (QY866_09695) - 1899602..1900141 (-) 540 WP_016264660.1 CvpA family protein -
  QY866_RS09710 (QY866_09700) rnhC 1900335..1901252 (+) 918 WP_011374100.1 ribonuclease HIII -
  QY866_RS09715 (QY866_09705) - 1901541..1901852 (-) 312 WP_011374099.1 DUF1292 domain-containing protein -
  QY866_RS09720 (QY866_09710) ruvX 1901902..1902345 (-) 444 WP_011374098.1 Holliday junction resolvase RuvX -
  QY866_RS09725 (QY866_09715) - 1902345..1902605 (-) 261 WP_011374097.1 IreB family regulatory phosphoprotein -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 87608.81 Da        Isoelectric Point: 6.0517

>NTDB_id=779921 QY866_RS09700 WP_011374102.1 1897183..1899546(-) (mutS/mutS2) [Latilactobacillus sakei strain A1262]
MNHKILKTLEYDKIKQMLQGYAITAFGQEQIATLEPINEADLIQIRLNQTKDGVDIERLKGGIPLPQLENIRPHLKRIEI
GAMLNGSELAQIGRVLRATSAVVRFFDDLEKDELELKALPELVAQFVTLPQLTERIRSSVADDGAILDTASTKLRGLRTG
LKQLEGQIRSRMASYTHGAKAKYLSDPIVTIRNDRYVIPVKQEYRGQFGGVVHDQSASGQTLFMEPQAIMELNNRLRQLQ
IEEQQEIERILAELSEAIMPERHNILANAELLGQLDFVNAKAQLAKALKATEPLINAENHVDLKQARHPLIDATKVVAND
IAIGADYQAIVVTGPNTGGKTITLKTLGLVQVMAQSGLFITAREESQVGVFSDIFADIGDEQSIEQNLSTFSAHMENIIQ
ILKQIDDRSLVLLDELGAGTDPQEGAALAIAILDQIGIVGANVVASTHYPELKIYGYNRPQTINASMEFDVATLQPTYRL
LIGVPGRSNAFDISTRLGLPNSIVDQAKQLMNDESQDLNNMITDLENQRKAAETEYQALRHELTEATDLHQQLSTAYQQF
FEDRETEMTKAKEKANAIVEKAEVKADKVITKLRDMQMNQGAQIKENQLIDAKAELGQLHQETTLKKNKVLQRAKRRQTL
KVGDDVLVTSYGQRGTLIRQVDSKNWEVQMGIIKMKIANDDLEKQKVVEDNRPQRHVTTVNSGGARHVKAQLDLRGKRYE
EAMAEVDQYIDAALLANYQQVTIVHGKGTGAIRQGVQEYLQANRQVKKYEYAPANAGGNGATIVTFK

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=779921 QY866_RS09700 WP_011374102.1 1897183..1899546(-) (mutS/mutS2) [Latilactobacillus sakei strain A1262]
ATGAATCATAAAATATTAAAAACATTAGAGTACGATAAAATTAAACAAATGTTGCAAGGTTATGCGATTACAGCATTTGG
TCAAGAACAAATAGCAACTTTAGAACCGATTAATGAAGCAGATCTGATTCAGATTCGCTTAAACCAAACCAAAGATGGTG
TTGATATCGAACGGTTAAAAGGTGGCATTCCATTGCCCCAACTGGAAAATATCAGACCACATTTAAAACGAATTGAAATC
GGTGCGATGTTAAATGGTAGTGAGCTCGCTCAAATCGGGCGCGTTTTACGTGCGACATCTGCCGTGGTTCGTTTCTTTGA
TGACCTGGAAAAAGACGAACTCGAATTAAAAGCCTTACCCGAATTAGTAGCGCAATTTGTCACGTTACCACAATTAACCG
AACGAATTAGAAGTTCGGTGGCTGATGATGGTGCCATTTTAGATACTGCTTCAACCAAGTTACGCGGTTTAAGAACGGGC
TTGAAGCAGTTAGAAGGCCAGATTAGAAGTCGGATGGCCAGCTACACACACGGTGCCAAGGCTAAATATTTAAGTGATCC
GATCGTGACGATTCGCAACGACCGCTACGTGATTCCTGTTAAACAAGAATACCGCGGCCAATTTGGTGGCGTCGTGCATG
ATCAAAGTGCCAGTGGGCAAACCCTATTCATGGAGCCCCAAGCGATTATGGAATTAAATAACCGTTTGCGCCAATTACAA
ATTGAAGAACAACAAGAAATCGAACGGATTTTGGCGGAATTATCAGAAGCTATCATGCCGGAACGTCACAATATTTTAGC
AAATGCTGAATTATTGGGTCAACTCGATTTCGTGAATGCTAAGGCCCAACTTGCGAAAGCTCTAAAAGCAACGGAACCTT
TAATCAATGCGGAAAACCATGTCGATTTAAAACAAGCACGGCATCCTTTAATTGATGCGACTAAAGTCGTGGCCAATGAT
ATTGCAATCGGTGCGGATTATCAAGCGATTGTGGTGACTGGTCCGAATACCGGTGGTAAAACCATCACACTTAAAACATT
GGGCTTAGTCCAAGTGATGGCCCAATCAGGGTTATTCATTACTGCGCGTGAGGAAAGCCAAGTTGGTGTCTTCTCAGATA
TCTTTGCTGATATTGGTGACGAACAATCAATCGAACAAAACTTGAGTACTTTCTCAGCACACATGGAAAATATCATTCAG
ATTCTCAAACAGATTGATGATCGGAGTTTGGTGCTATTAGATGAATTAGGTGCCGGGACTGATCCGCAAGAAGGGGCCGC
TTTAGCGATTGCCATCTTGGATCAAATCGGGATTGTCGGAGCCAACGTGGTTGCGTCAACCCATTATCCTGAATTGAAGA
TTTATGGCTACAATCGACCACAAACAATTAATGCCAGCATGGAATTTGATGTGGCGACTTTACAGCCAACGTACCGTCTT
TTAATTGGGGTACCTGGTCGGAGTAATGCATTTGATATTTCAACGCGCCTAGGCTTACCAAATTCAATCGTCGATCAAGC
GAAACAGTTAATGAACGATGAAAGCCAAGATTTGAACAATATGATTACCGATCTTGAAAATCAACGTAAAGCGGCTGAAA
CAGAATACCAAGCACTACGTCATGAATTGACGGAAGCGACGGATCTACATCAACAACTCTCAACAGCTTATCAACAATTC
TTTGAAGATCGTGAAACGGAAATGACGAAGGCTAAGGAAAAAGCAAATGCGATTGTCGAAAAAGCTGAAGTCAAAGCGGA
TAAAGTCATCACTAAATTGCGTGACATGCAGATGAATCAAGGCGCACAGATTAAGGAAAATCAATTAATCGATGCCAAGG
CTGAATTAGGGCAATTACATCAAGAAACAACCTTGAAGAAAAATAAAGTGCTTCAACGGGCTAAGCGGCGTCAAACGCTG
AAAGTTGGGGATGACGTATTGGTCACGTCTTACGGCCAACGAGGCACTTTAATTCGCCAAGTCGACTCGAAAAATTGGGA
AGTCCAAATGGGCATCATCAAGATGAAGATTGCCAACGACGATTTAGAAAAGCAAAAAGTCGTTGAAGATAACCGACCAC
AACGCCATGTAACAACCGTTAATAGCGGTGGCGCACGCCACGTTAAAGCACAATTGGATTTACGCGGCAAACGCTATGAA
GAAGCAATGGCCGAAGTGGATCAATACATTGATGCGGCGCTATTAGCTAATTATCAACAAGTCACGATTGTCCATGGTAA
AGGGACTGGCGCGATTCGCCAAGGGGTTCAAGAATACCTCCAAGCTAACCGTCAAGTGAAGAAGTACGAATATGCACCAG
CTAATGCTGGTGGGAATGGTGCAACCATTGTGACGTTTAAGTAA

Domains

Predicted by InterProScan.

MutS2 and Smr-associated SH3 domain (MSSS)

(642-682)

MutS domain V (MutS_V)

(330-512)

Smr domain (Smr)

(712-787)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38YN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

46.574

100

0.466