Detailed information NTG0779903

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: QY866_RS07460
• Genome accession: NZ_CP129530
• Coordinates: 1497357..1499885 (-)
• Length: 842 a.a.
• NCBI ID: WP_056948399.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei strain A1262
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1492357..1504885

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QY866_RS07435 (QY866_07425)	-	1492825..1493541 (-)	717	WP_076631884.1	MerR family transcriptional regulator	-
QY866_RS07440 (QY866_07430)	-	1493735..1494835 (-)	1101	WP_011374515.1	DNA alkylation repair protein	-
QY866_RS07445 (QY866_07435)	-	1494926..1495537 (-)	612	WP_056948489.1	LysE family transporter	-
QY866_RS07450 (QY866_07440)	-	1495803..1496042 (+)	240	WP_011374513.1	hypothetical protein	-
QY866_RS07455 (QY866_07445)	-	1496103..1497314 (-)	1212	WP_011374512.1	GNAT family N-acetyltransferase	-
QY866_RS07460 (QY866_07450)	recD/recD2/recDB	1497357..1499885 (-)	2529	WP_056948399.1	ATP-dependent RecD-like DNA helicase	Machinery gene
QY866_RS07465 (QY866_07455)	-	1499891..1500550 (-)	660	WP_011374510.1	tetratricopeptide repeat protein	-
QY866_RS07470 (QY866_07460)	-	1500562..1501221 (-)	660	WP_011374509.1	histidine phosphatase family protein	-
QY866_RS07475 (QY866_07465)	-	1501374..1502708 (-)	1335	WP_025015827.1	FAD-dependent oxidoreductase	-
QY866_RS07480 (QY866_07470)	-	1502945..1504243 (-)	1299	WP_056948397.1	pyrimidine-nucleoside phosphorylase	-

Sequence

Protein

• Length: 842 a.a.
• Molecular weight: 93343.54 Da
• Isoelectric Point: 5.0770

>NTDB_id=779903 QY866_RS07460 WP_056948399.1 1497357..1499885(-) (recD/recD2/recDB) [Latilactobacillus sakei strain A1262]
MAILETENTVDNKPTVTGTVQSVFYENPGNFFKILLIKIAHKTIDWHEPEIVVTGSFGEIKEDERYTFYGKVITHPKYGQ
QFQADNYQVDQPTTKTGLVAYLSGEKFAGIGQKTAEKIVDTLGLDAIDKILADSTVLAPLGLNDKKQATLVETLTINNGM
EQIIIGLNNYGFGSSMAYNIYQTYHEDTLKIIQENPYQLVADIAGIGFKRADNLAEKIGFAADSPARIQGALMQALNELT
NQAGDTFTQAKPLLAASIQLMEQARNVAIDPNLVAEQLMVLAHDGKVVGDENRIYPNGLYNAEWQIANHLMRIENERDKI
SYPKHDLDKEIRRLEKRFKMSYDDVQKNAIKLAMTHRAFLLTGGPGTGKTTIINGIVTLFAELNGLSLDINEYKDTPFPI
LLAAPTGRAAKRMSETTGLPASTIHRLLGITGRENNPDIDSKELEGGLLIVDEMSMVDTYLFRSLIRAVPSNMQVVFVGD
KDQLPSVGAGQVFFDLLQSQAIPAIELQQIYRQDDESTIIPLAHEINQGQLPADLLQPQKDRSFIQCSPYQIESVIKQVV
TKAKDRGFETKDIQVLAPMYRGAAGIDQLNPMIQNIMNPKVDDRKKQVSLGNVHYRIGDKILHLVNSPELNVFNGEIGQI
TGITYAKDSDDKMDELTIAFDSTEITYKRTEWHKITLAYCTSIHKAQGSEFEMVILPLVNQYQRMLKRNLLYTAVTRARS
LLILIGEPSAFDKAAKELSANRQTTLKERIISVFNGEKVSQAVKTASVGLTEAKPTVEKLTPAKAAAPEQLALVDDADDS
EETIQEAPANYELTPALVSGHQIDPMIGMADLTPYTFMTSAK

Nucleotide

• Length: 2529 bp

>NTDB_id=779903 QY866_RS07460 WP_056948399.1 1497357..1499885(-) (recD/recD2/recDB) [Latilactobacillus sakei strain A1262]
ATGGCGATTTTGGAAACAGAAAATACGGTCGATAATAAACCAACCGTTACCGGAACGGTCCAAAGTGTTTTTTACGAGAA
TCCCGGTAACTTTTTTAAGATTCTCTTGATTAAAATTGCCCATAAGACAATCGATTGGCACGAGCCAGAGATTGTCGTGA
CTGGTAGTTTTGGTGAGATTAAAGAAGACGAACGCTATACGTTTTATGGCAAAGTCATCACCCATCCTAAATACGGTCAA
CAATTTCAAGCTGACAACTATCAGGTTGACCAACCGACGACTAAGACTGGCTTAGTCGCCTATTTATCTGGCGAAAAATT
TGCCGGCATTGGTCAAAAAACGGCTGAGAAAATTGTCGATACCTTAGGATTAGATGCGATTGATAAGATCTTAGCGGACT
CAACTGTTTTAGCGCCGCTGGGTTTAAATGATAAGAAACAAGCGACGTTGGTTGAAACGCTGACGATTAACAATGGCATG
GAACAAATTATCATTGGTCTCAATAATTACGGTTTTGGGAGCTCGATGGCCTATAACATCTACCAAACTTATCACGAAGA
TACCTTGAAGATTATTCAAGAAAATCCTTATCAACTAGTGGCCGACATTGCCGGTATTGGGTTTAAACGAGCGGATAATT
TAGCTGAGAAGATTGGGTTTGCAGCCGATTCACCAGCGCGGATTCAAGGGGCGCTGATGCAAGCCTTGAACGAACTGACC
AATCAGGCCGGCGATACGTTTACCCAGGCGAAGCCGTTATTAGCAGCCAGCATTCAATTGATGGAACAGGCCCGGAACGT
GGCGATTGATCCGAATTTAGTGGCAGAGCAATTAATGGTCTTGGCACACGATGGCAAAGTCGTTGGTGATGAAAATCGGA
TTTATCCGAATGGTTTGTACAACGCGGAATGGCAAATTGCCAACCACTTGATGCGGATTGAAAATGAACGGGATAAAATT
AGTTATCCTAAACATGATCTGGATAAAGAAATTCGCCGGCTCGAAAAACGCTTTAAGATGAGCTATGATGATGTCCAAAA
AAATGCAATTAAATTAGCGATGACTCACAGAGCCTTTCTACTAACAGGGGGCCCTGGTACTGGGAAAACAACGATTATTA
ATGGGATTGTGACTTTATTTGCTGAGTTAAACGGTCTTTCGCTTGATATCAACGAATATAAAGACACACCATTTCCAATT
TTATTGGCAGCGCCTACTGGGCGGGCCGCTAAACGGATGAGCGAAACAACTGGCTTGCCAGCTAGCACGATTCATCGCTT
ATTAGGAATTACGGGACGTGAAAATAATCCTGATATCGATAGTAAGGAACTAGAAGGCGGCTTATTAATTGTCGATGAAA
TGTCGATGGTTGATACGTACCTCTTTAGATCATTGATTCGAGCAGTGCCTAGCAATATGCAAGTCGTCTTTGTTGGTGAT
AAAGATCAGTTGCCATCAGTTGGCGCGGGGCAAGTCTTTTTTGATTTACTGCAGAGTCAGGCAATTCCGGCAATCGAACT
GCAACAAATCTATCGACAAGACGATGAGTCGACGATTATTCCGCTAGCTCATGAGATTAATCAGGGCCAACTACCAGCCG
ATCTACTCCAACCGCAAAAGGATCGGAGCTTTATTCAGTGCAGTCCTTATCAGATTGAATCGGTGATTAAGCAAGTGGTC
ACTAAAGCAAAAGACCGGGGCTTTGAAACAAAAGACATTCAGGTGCTAGCACCGATGTATCGGGGCGCAGCCGGAATTGA
TCAATTAAATCCAATGATTCAAAATATCATGAATCCAAAGGTCGATGATCGTAAGAAACAAGTCAGTTTAGGTAACGTTC
ATTATCGGATTGGCGATAAGATTTTACATCTGGTTAATAGTCCGGAACTAAACGTTTTTAACGGTGAAATCGGGCAAATA
ACCGGGATTACGTATGCTAAAGATAGTGATGACAAGATGGACGAGTTAACGATTGCCTTTGATAGTACCGAAATTACCTA
TAAACGGACGGAATGGCATAAAATTACGTTGGCGTATTGTACGTCGATTCATAAGGCTCAAGGTTCTGAATTTGAAATGG
TAATTCTACCCTTGGTTAACCAATATCAACGGATGCTGAAACGAAACTTGTTGTATACAGCAGTGACACGGGCGCGGTCC
TTACTGATTTTAATTGGGGAACCAAGTGCTTTTGATAAGGCGGCCAAGGAACTCTCCGCAAATCGGCAAACAACGCTTAA
GGAACGGATTATCAGCGTCTTTAATGGCGAAAAAGTGAGCCAAGCGGTCAAAACCGCTAGTGTTGGCTTAACGGAAGCTA
AACCAACTGTTGAAAAACTAACCCCGGCTAAAGCAGCAGCGCCAGAACAATTGGCATTAGTGGACGATGCAGATGACAGC
GAAGAAACAATTCAAGAAGCACCTGCTAATTATGAATTAACACCAGCCTTGGTGAGTGGTCATCAGATTGACCCGATGAT
TGGGATGGCGGATTTAACGCCGTACACATTCATGACAAGTGCTAAGTAG

Domains

Predicted by InterProScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (589-660)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (678-725)

• AAA domain (AAA_30) (342-547)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	46.933	89.074	0.418