Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   QY866_RS06060 Genome accession   NZ_CP129530
Coordinates   1206306..1208045 (+) Length   579 a.a.
NCBI ID   WP_056946696.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain A1262     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1201306..1213045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY866_RS06030 (QY866_06020) tenA 1201379..1202062 (+) 684 WP_011374795.1 thiaminase II -
  QY866_RS06035 (QY866_06025) thiW 1202055..1202561 (+) 507 WP_056946699.1 energy coupling factor transporter S component ThiW -
  QY866_RS06040 (QY866_06030) - 1202593..1203558 (-) 966 WP_337457541.1 diacylglycerol kinase family protein -
  QY866_RS06045 (QY866_06035) - 1203691..1205379 (-) 1689 WP_337457543.1 ribonuclease J -
  QY866_RS06050 (QY866_06040) - 1205384..1205596 (-) 213 WP_011374791.1 DNA-directed RNA polymerase subunit epsilon -
  QY866_RS06055 (QY866_06045) - 1205793..1206278 (+) 486 WP_011374790.1 hypothetical protein -
  QY866_RS06060 (QY866_06050) rcrP 1206306..1208045 (+) 1740 WP_056946696.1 ABC transporter ATP-binding protein Regulator
  QY866_RS06065 (QY866_06055) rcrQ 1208032..1209795 (+) 1764 WP_341843917.1 ABC transporter ATP-binding protein Regulator
  QY866_RS06070 (QY866_06060) def 1209844..1210401 (-) 558 WP_011374787.1 peptide deformylase -
  QY866_RS06075 (QY866_06065) - 1210904..1211587 (+) 684 WP_011374786.1 hypothetical protein -
  QY866_RS06080 (QY866_06070) pdhA 1211910..1213019 (+) 1110 WP_056946690.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 64667.15 Da        Isoelectric Point: 9.1434

>NTDB_id=779884 QY866_RS06060 WP_056946696.1 1206306..1208045(+) (rcrP) [Latilactobacillus sakei strain A1262]
MKLMWRYTIRYKKLLFWNFICVFGFILIELGLPTLLGQIIDKGINRHTVGPVWQYGTLMVVISLIGLVGLIGLAYTGSRL
TTNLTRDIRNDIFKKTMQFSHHEYGEFGVSSLITRTTNDAFQVTQFMVQVLRTGFMTPMMIVASAFMIVRTSLSLSWIVF
AAIPILLVGVVIIGWLSEPMSAEQQKNLDAINLNLRENLTGIRVIRAFVREKFQSMRFRKVNEAYSQSSIKLFTLVALAQ
PGFSFIFNIVFVLIIWQGAVQINTGHLAVGTLIAFIEYIFHVLFSFMLFASVFMMYPRAAVSAERIEKVLNSPVDITDDD
QGIQTTTTQGELAFENVSFAYPGPTESPVIRDVSFKAHPGETVAFIGSTGSGKSTLIQLIPRFFDVTRGQVMIDGYDVRD
YQLKALRQKIGFIPQKAVLFTGTIADNLRYGNPEATDAELWDALTIAQSKTFVAEKPEGLQTYLAEGGNNLSGGQKQRLA
IARAIVRRPDIYVFDDSFSALDYQTDAALRGALKSITKDATVLIVAQRVGTIMNADRIVVLNEGQVVGIGTHKELLKTNE
VYRAIAASQLSKEELNEEY

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=779884 QY866_RS06060 WP_056946696.1 1206306..1208045(+) (rcrP) [Latilactobacillus sakei strain A1262]
ATGAAATTAATGTGGCGCTATACCATTCGCTATAAAAAACTACTATTTTGGAATTTTATTTGCGTATTTGGGTTTATTTT
AATTGAACTAGGATTACCAACTTTATTAGGACAAATTATTGATAAAGGTATCAACCGCCATACGGTCGGGCCGGTTTGGC
AATATGGGACTTTAATGGTTGTTATTTCCTTAATTGGCTTGGTGGGGTTAATTGGCCTAGCCTACACGGGGAGTCGCTTA
ACCACTAATTTAACACGTGATATCCGGAACGATATTTTTAAAAAGACGATGCAATTTTCACATCATGAATATGGTGAATT
TGGCGTGTCTTCCTTAATTACTCGGACGACCAACGATGCGTTTCAAGTGACGCAATTCATGGTGCAAGTGTTACGAACTG
GGTTTATGACCCCGATGATGATCGTTGCCAGTGCGTTTATGATTGTGCGGACGAGTCTGTCGTTATCATGGATTGTTTTT
GCAGCCATTCCGATTTTATTAGTTGGGGTGGTCATCATTGGTTGGTTATCCGAACCAATGTCTGCAGAACAACAAAAAAA
CTTAGATGCAATCAATTTAAACTTACGTGAAAATTTAACTGGGATTCGTGTTATTCGCGCATTTGTGCGTGAAAAATTCC
AGAGTATGCGTTTTAGAAAAGTTAATGAAGCCTACAGTCAGAGTTCAATCAAACTCTTTACATTAGTAGCCCTCGCACAA
CCTGGCTTTTCATTTATCTTCAATATTGTGTTCGTGTTAATCATTTGGCAAGGGGCGGTTCAAATTAACACGGGTCACTT
GGCAGTGGGGACGTTAATTGCCTTTATTGAATACATTTTCCACGTACTATTTTCATTCATGCTCTTCGCAAGTGTCTTCA
TGATGTACCCTAGAGCGGCTGTTTCAGCAGAACGGATTGAAAAAGTCCTTAATTCACCCGTAGATATTACGGATGATGAC
CAAGGGATTCAAACCACGACTACCCAAGGCGAATTGGCTTTTGAAAATGTGTCGTTTGCTTATCCTGGTCCGACAGAAAG
TCCGGTCATTCGGGATGTCAGTTTTAAAGCCCATCCAGGGGAAACCGTCGCCTTCATCGGTAGTACGGGGAGTGGTAAAT
CAACCTTAATCCAATTGATTCCACGCTTTTTCGATGTGACACGGGGTCAAGTGATGATTGATGGTTACGATGTTCGTGAT
TATCAATTGAAAGCATTACGCCAAAAAATTGGTTTTATTCCTCAAAAAGCAGTCCTCTTTACCGGCACGATTGCGGATAA
CTTGCGCTATGGTAATCCGGAAGCAACGGATGCTGAATTATGGGATGCTTTAACGATTGCCCAATCCAAAACATTTGTGG
CGGAAAAACCAGAGGGACTCCAAACGTATTTGGCCGAAGGGGGCAACAACTTATCAGGTGGGCAAAAGCAACGGCTAGCG
ATTGCCAGAGCAATTGTTCGTCGGCCAGACATTTACGTCTTTGACGATAGCTTCTCAGCTTTGGATTATCAAACTGATGC
GGCTTTACGGGGCGCTTTAAAATCGATTACGAAAGATGCGACGGTCTTAATTGTCGCCCAACGTGTAGGGACGATTATGA
ATGCGGATCGAATTGTCGTCTTAAATGAAGGCCAAGTTGTGGGCATCGGGACCCACAAGGAATTACTTAAAACAAATGAG
GTTTATCGGGCCATTGCCGCCTCACAGTTATCAAAGGAGGAGCTCAATGAAGAATATTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-283)

ABC transporter (ABC_tran)

(351-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.646

100

0.413