Detailed information NTG0779818

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: QY867_RS06975
• Genome accession: NZ_CP129529
• Coordinates: 1386931..1389459 (-)
• Length: 842 a.a.
• NCBI ID: WP_056948399.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei strain A1291
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1381931..1394459

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QY867_RS06950 (QY867_06935)	-	1382399..1383115 (-)	717	WP_076631884.1	MerR family transcriptional regulator	-
QY867_RS06955 (QY867_06940)	-	1383309..1384409 (-)	1101	WP_011374515.1	DNA alkylation repair protein	-
QY867_RS06960 (QY867_06945)	-	1384500..1385111 (-)	612	WP_056948489.1	LysE family transporter	-
QY867_RS06965 (QY867_06950)	-	1385377..1385616 (+)	240	WP_011374513.1	hypothetical protein	-
QY867_RS06970 (QY867_06955)	-	1385677..1386888 (-)	1212	WP_011374512.1	GNAT family N-acetyltransferase	-
QY867_RS06975 (QY867_06960)	recD/recD2/recDB	1386931..1389459 (-)	2529	WP_056948399.1	ATP-dependent RecD-like DNA helicase	Machinery gene
QY867_RS06980 (QY867_06965)	-	1389465..1390124 (-)	660	WP_011374510.1	tetratricopeptide repeat protein	-
QY867_RS06985 (QY867_06970)	-	1390136..1390795 (-)	660	WP_011374509.1	histidine phosphatase family protein	-
QY867_RS06990 (QY867_06975)	-	1390948..1392282 (-)	1335	WP_025015827.1	FAD-dependent oxidoreductase	-
QY867_RS06995 (QY867_06980)	-	1392519..1393817 (-)	1299	WP_056948397.1	pyrimidine-nucleoside phosphorylase	-

Sequence

Protein

• Length: 842 a.a.
• Molecular weight: 93343.54 Da
• Isoelectric Point: 5.0770

>NTDB_id=779818 QY867_RS06975 WP_056948399.1 1386931..1389459(-) (recD/recD2/recDB) [Latilactobacillus sakei strain A1291]
MAILETENTVDNKPTVTGTVQSVFYENPGNFFKILLIKIAHKTIDWHEPEIVVTGSFGEIKEDERYTFYGKVITHPKYGQ
QFQADNYQVDQPTTKTGLVAYLSGEKFAGIGQKTAEKIVDTLGLDAIDKILADSTVLAPLGLNDKKQATLVETLTINNGM
EQIIIGLNNYGFGSSMAYNIYQTYHEDTLKIIQENPYQLVADIAGIGFKRADNLAEKIGFAADSPARIQGALMQALNELT
NQAGDTFTQAKPLLAASIQLMEQARNVAIDPNLVAEQLMVLAHDGKVVGDENRIYPNGLYNAEWQIANHLMRIENERDKI
SYPKHDLDKEIRRLEKRFKMSYDDVQKNAIKLAMTHRAFLLTGGPGTGKTTIINGIVTLFAELNGLSLDINEYKDTPFPI
LLAAPTGRAAKRMSETTGLPASTIHRLLGITGRENNPDIDSKELEGGLLIVDEMSMVDTYLFRSLIRAVPSNMQVVFVGD
KDQLPSVGAGQVFFDLLQSQAIPAIELQQIYRQDDESTIIPLAHEINQGQLPADLLQPQKDRSFIQCSPYQIESVIKQVV
TKAKDRGFETKDIQVLAPMYRGAAGIDQLNPMIQNIMNPKVDDRKKQVSLGNVHYRIGDKILHLVNSPELNVFNGEIGQI
TGITYAKDSDDKMDELTIAFDSTEITYKRTEWHKITLAYCTSIHKAQGSEFEMVILPLVNQYQRMLKRNLLYTAVTRARS
LLILIGEPSAFDKAAKELSANRQTTLKERIISVFNGEKVSQAVKTASVGLTEAKPTVEKLTPAKAAAPEQLALVDDADDS
EETIQEAPANYELTPALVSGHQIDPMIGMADLTPYTFMTSAK

Nucleotide

• Length: 2529 bp

>NTDB_id=779818 QY867_RS06975 WP_056948399.1 1386931..1389459(-) (recD/recD2/recDB) [Latilactobacillus sakei strain A1291]
ATGGCGATTTTGGAAACAGAAAATACGGTCGATAATAAACCAACCGTTACCGGAACGGTCCAAAGTGTTTTTTACGAGAA
TCCCGGTAACTTTTTTAAGATTCTCTTGATTAAAATTGCCCATAAGACAATCGATTGGCACGAGCCAGAGATTGTCGTGA
CTGGTAGTTTTGGTGAGATTAAAGAAGACGAACGCTATACGTTTTATGGCAAAGTCATCACCCATCCTAAATACGGTCAA
CAATTTCAAGCTGACAACTATCAGGTTGACCAACCGACGACTAAGACTGGCTTAGTCGCCTATTTATCTGGCGAAAAATT
TGCCGGCATTGGTCAAAAAACGGCTGAGAAAATTGTCGATACCTTAGGATTAGATGCGATTGATAAGATCTTAGCGGACT
CAACTGTTTTAGCGCCGCTGGGTTTAAATGATAAGAAACAAGCGACGTTGGTTGAAACGCTGACGATTAACAATGGCATG
GAACAAATTATCATTGGTCTCAATAATTACGGTTTTGGGAGCTCGATGGCCTATAACATCTACCAAACTTATCACGAAGA
TACCTTGAAGATTATTCAAGAAAATCCTTATCAACTAGTGGCCGACATTGCCGGTATTGGGTTTAAACGAGCGGATAATT
TAGCTGAGAAGATTGGGTTTGCAGCCGATTCACCAGCGCGGATTCAAGGGGCGCTGATGCAAGCCTTGAACGAACTGACC
AATCAGGCCGGCGATACGTTTACCCAGGCGAAGCCGTTATTAGCAGCCAGCATTCAATTGATGGAACAGGCCCGGAACGT
GGCGATTGATCCGAATTTAGTGGCAGAGCAATTAATGGTCTTGGCACACGATGGCAAAGTCGTTGGTGATGAAAATCGGA
TTTATCCGAATGGTTTGTACAACGCGGAATGGCAAATTGCCAACCACTTGATGCGGATTGAAAATGAACGGGATAAAATT
AGTTATCCTAAACATGATCTGGATAAAGAAATTCGCCGGCTCGAAAAACGCTTTAAGATGAGCTATGATGATGTCCAAAA
AAATGCAATTAAATTAGCGATGACTCACAGAGCCTTTCTACTAACAGGGGGCCCTGGTACTGGGAAAACAACGATTATTA
ATGGGATTGTGACTTTATTTGCTGAGTTAAACGGTCTTTCGCTTGATATCAACGAATATAAAGACACACCATTTCCAATT
TTATTGGCAGCGCCTACTGGGCGGGCCGCTAAACGGATGAGCGAAACAACTGGCTTGCCAGCTAGCACGATTCATCGCTT
ATTAGGAATTACGGGACGTGAAAATAATCCTGATATCGATAGTAAGGAACTAGAAGGCGGCTTATTAATTGTCGATGAAA
TGTCGATGGTTGATACGTACCTCTTTAGATCATTGATTCGAGCAGTGCCTAGCAATATGCAAGTCGTCTTTGTTGGTGAT
AAAGATCAGTTGCCATCAGTTGGCGCGGGGCAAGTCTTTTTTGATTTACTGCAGAGTCAGGCAATTCCGGCAATCGAACT
GCAACAAATCTATCGACAAGACGATGAGTCGACGATTATTCCGCTAGCTCATGAGATTAATCAGGGCCAACTACCAGCCG
ATCTACTCCAACCGCAAAAGGATCGGAGCTTTATTCAGTGCAGTCCTTATCAGATTGAATCGGTGATTAAGCAAGTGGTC
ACTAAAGCAAAAGACCGGGGCTTTGAAACAAAAGACATTCAGGTGCTAGCACCGATGTATCGGGGCGCAGCCGGAATTGA
TCAATTAAATCCAATGATTCAAAATATCATGAATCCAAAGGTCGATGATCGTAAGAAACAAGTCAGTTTAGGTAACGTTC
ATTATCGGATTGGCGATAAGATTTTACATCTGGTTAATAGTCCGGAACTAAACGTTTTTAACGGTGAAATCGGGCAAATA
ACCGGGATTACGTATGCTAAAGATAGTGATGACAAGATGGACGAGTTAACGATTGCCTTTGATAGTACCGAAATTACCTA
TAAACGGACGGAATGGCATAAAATTACGTTGGCGTATTGTACGTCGATTCATAAGGCTCAAGGTTCTGAATTTGAAATGG
TAATTCTACCCTTGGTTAACCAATATCAACGGATGCTGAAACGAAACTTGTTGTATACAGCAGTGACACGGGCGCGGTCC
TTACTGATTTTAATTGGGGAACCAAGTGCTTTTGATAAGGCGGCCAAGGAACTCTCCGCAAATCGGCAAACAACGCTTAA
GGAACGGATTATCAGCGTCTTTAATGGCGAAAAAGTGAGCCAAGCGGTCAAAACCGCTAGTGTTGGCTTAACGGAAGCTA
AACCAACTGTTGAAAAACTAACCCCGGCTAAAGCAGCAGCGCCAGAACAATTGGCATTAGTGGACGATGCAGATGACAGC
GAAGAAACAATTCAAGAAGCACCTGCTAATTATGAATTAACACCAGCCTTGGTGAGTGGTCATCAGATTGACCCGATGAT
TGGGATGGCGGATTTAACGCCGTACACATTCATGACAAGTGCTAAGTAG

Domains

Predicted by InterProScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (589-660)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (678-725)

• AAA domain (AAA_30) (342-547)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	46.933	89.074	0.418