Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   QY867_RS05580 Genome accession   NZ_CP129529
Coordinates   1097606..1099369 (+) Length   587 a.a.
NCBI ID   WP_341843917.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain A1291     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1092606..1104369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY867_RS05560 (QY867_05545) - 1093265..1094953 (-) 1689 WP_337457543.1 ribonuclease J -
  QY867_RS05565 (QY867_05550) - 1094958..1095170 (-) 213 WP_011374791.1 DNA-directed RNA polymerase subunit epsilon -
  QY867_RS05570 (QY867_05555) - 1095367..1095852 (+) 486 WP_011374790.1 hypothetical protein -
  QY867_RS05575 (QY867_05560) rcrP 1095880..1097619 (+) 1740 WP_056946696.1 ABC transporter ATP-binding protein Regulator
  QY867_RS05580 (QY867_05565) rcrQ 1097606..1099369 (+) 1764 WP_341843917.1 ABC transporter ATP-binding protein Regulator
  QY867_RS05585 (QY867_05570) def 1099418..1099975 (-) 558 WP_011374787.1 peptide deformylase -
  QY867_RS05590 (QY867_05575) - 1100478..1101161 (+) 684 WP_011374786.1 hypothetical protein -
  QY867_RS05595 (QY867_05580) pdhA 1101484..1102593 (+) 1110 WP_056946690.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha -
  QY867_RS05600 (QY867_05585) - 1102610..1103527 (+) 918 Protein_1081 alpha-ketoacid dehydrogenase subunit beta -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 65116.69 Da        Isoelectric Point: 6.2494

>NTDB_id=779800 QY867_RS05580 WP_341843917.1 1097606..1099369(+) (rcrQ) [Latilactobacillus sakei strain A1291]
MKNIKVLKRLMRYIGPYKITFWSAITATVISVLANALWPFIMGLAVTEISQNLAQHVAVNFSYITKVIAMILSFALLYQT
MMFLGSFLMTRAVQHAMRDLRRDINLQMNALPVRFFDSQQQGNILSRVTNDVDAITNALQQSLIQVVTSILGIIMAVVMM
LTINLWMALLSLIMIPTSLLISKAIIKKSQVYFQGQQNTLGEMNGYVQENYGGFSVLKLYGQEERAVDEFAAITDRLTEF
GFKAAFISGIMMPLVGLTTNLTYAGMATLGGYYVLHGVITVGNLQAFIQYIWQINQPISQITQLSGVMQAAAAATQRVFE
ILDEPIEPTDQETAELPADVQGKVEFKDVSFSYDPAKPLIRDLSFTANLGDKIAIVGPTGAGKTTMINLLMRFYDVSSGQ
ILIDGVDTRQLSKQTVRSLFGMVLQDAWLYHTTITENIRFGKLDATEYEVVDAAKTANVDHFIHTLPNGYQMTIDEEADN
VSLGQKQLLTIARAVIANPKILILDEATSSVDTRLESLLQKAMEKVMQGRTSFVIAHRLSTIRDANLILVMDHGQIVEKG
THDDLLAANGVYAKLYNSQFAEAKLNA

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=779800 QY867_RS05580 WP_341843917.1 1097606..1099369(+) (rcrQ) [Latilactobacillus sakei strain A1291]
ATGAAGAATATTAAGGTGCTCAAACGCCTGATGCGCTATATTGGGCCGTATAAAATAACGTTCTGGTCAGCAATTACTGC
AACGGTGATTTCCGTTTTAGCGAATGCGCTATGGCCATTTATCATGGGACTAGCAGTGACTGAAATTAGTCAAAACTTAG
CGCAACACGTCGCCGTTAACTTTAGTTACATTACTAAAGTGATTGCGATGATTCTCAGCTTTGCATTACTTTATCAAACG
ATGATGTTTCTGGGATCGTTTTTAATGACGCGTGCCGTCCAACACGCAATGCGTGATTTACGGCGGGATATCAATCTACA
GATGAACGCTTTGCCAGTCCGTTTCTTTGATTCACAACAACAAGGCAATATCTTGTCGCGGGTTACTAATGATGTTGATG
CAATTACCAATGCCTTGCAACAGAGTTTAATCCAAGTGGTGACCTCAATTTTGGGGATCATCATGGCGGTTGTCATGATG
TTGACGATTAATTTATGGATGGCATTACTATCCTTAATTATGATTCCGACCTCACTTTTGATTTCTAAAGCAATCATCAA
AAAGTCACAAGTTTACTTCCAAGGGCAACAAAATACCTTGGGTGAGATGAACGGCTATGTTCAAGAAAACTATGGTGGCT
TCAGTGTCTTGAAGTTGTATGGTCAAGAAGAACGAGCAGTTGATGAATTTGCAGCGATTACGGATCGATTGACTGAATTT
GGCTTCAAAGCGGCCTTTATTTCAGGGATTATGATGCCATTAGTGGGTTTGACGACTAACTTGACTTACGCTGGGATGGC
AACCTTGGGTGGTTACTATGTCTTGCACGGTGTCATTACGGTTGGTAACTTGCAGGCCTTTATTCAATATATTTGGCAGA
TTAATCAACCGATTTCGCAAATCACACAATTATCCGGTGTGATGCAAGCCGCTGCCGCTGCGACACAACGAGTTTTTGAA
ATCTTAGATGAACCGATTGAACCAACTGATCAAGAAACGGCTGAATTACCGGCTGATGTTCAGGGGAAAGTTGAATTTAA
AGATGTCAGCTTTAGCTATGATCCAGCCAAACCGTTGATTCGTGATTTAAGTTTCACTGCTAATCTGGGCGATAAAATTG
CGATTGTTGGGCCAACTGGGGCCGGGAAAACGACGATGATTAATTTATTAATGCGTTTTTACGATGTCAGTTCTGGTCAA
ATCCTGATTGATGGCGTCGATACCCGCCAATTGAGTAAACAGACAGTTCGCTCACTCTTTGGGATGGTGCTGCAGGATGC
TTGGTTGTACCACACAACGATTACGGAAAATATTCGTTTTGGGAAGCTAGATGCCACTGAATATGAAGTCGTGGATGCTG
CCAAAACGGCTAATGTTGATCACTTTATCCATACATTGCCAAATGGCTATCAGATGACAATTGATGAAGAAGCGGATAAC
GTGTCGTTAGGACAAAAGCAACTCTTAACGATTGCTCGGGCAGTGATTGCTAATCCTAAAATTTTGATTTTAGATGAAGC
AACCAGTTCAGTCGATACGCGCTTAGAAAGCTTATTACAAAAGGCGATGGAAAAAGTGATGCAAGGACGAACAAGCTTTG
TGATTGCCCATCGCTTATCAACAATTCGGGATGCTAACTTAATTTTAGTGATGGATCACGGTCAAATTGTTGAAAAAGGA
ACGCATGATGACTTATTAGCCGCTAATGGTGTTTATGCTAAGCTTTATAACAGTCAATTTGCAGAAGCAAAATTAAATGC
ATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(24-297)

ABC transporter (ABC_tran)

(361-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.857

100

0.429