Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   QY867_RS05260 Genome accession   NZ_CP129529
Coordinates   1034984..1036714 (+) Length   576 a.a.
NCBI ID   WP_251944611.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain A1291     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1029984..1041714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY867_RS05215 (QY867_05200) mgsA 1030417..1030839 (+) 423 WP_056948772.1 methylglyoxal synthase -
  QY867_RS05220 (QY867_05205) - 1030923..1031453 (+) 531 WP_052039261.1 YoaK family protein -
  QY867_RS05225 (QY867_05210) - 1031390..1031617 (+) 228 WP_341843913.1 hypothetical protein -
  QY867_RS05230 (QY867_05215) - 1031614..1031796 (-) 183 WP_035146748.1 hypothetical protein -
  QY867_RS05235 (QY867_05220) - 1031789..1032109 (-) 321 WP_011374852.1 hypothetical protein -
  QY867_RS05240 (QY867_05225) - 1032130..1032780 (-) 651 WP_231952378.1 type II CAAX endopeptidase family protein -
  QY867_RS05245 (QY867_05230) - 1032988..1033188 (+) 201 WP_004270328.1 cold-shock protein -
  QY867_RS05250 (QY867_05235) - 1033386..1034114 (-) 729 WP_011374850.1 ion transporter -
  QY867_RS05255 (QY867_05240) - 1034319..1034960 (+) 642 WP_016265275.1 TetR family transcriptional regulator -
  QY867_RS05260 (QY867_05245) rcrP 1034984..1036714 (+) 1731 WP_251944611.1 ABC transporter ATP-binding protein Regulator
  QY867_RS05265 (QY867_05250) rcrQ 1036714..1038591 (+) 1878 WP_056947880.1 ABC transporter ATP-binding protein Regulator
  QY867_RS05270 (QY867_05255) - 1038689..1039699 (+) 1011 WP_096584801.1 serine hydrolase domain-containing protein -
  QY867_RS05275 (QY867_05260) manA 1039801..1040775 (+) 975 WP_056947876.1 mannose-6-phosphate isomerase, class I -
  QY867_RS05280 (QY867_05265) - 1040849..1041493 (+) 645 WP_056947874.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 63682.83 Da        Isoelectric Point: 6.6228

>NTDB_id=779796 QY867_RS05260 WP_251944611.1 1034984..1036714(+) (rcrP) [Latilactobacillus sakei strain A1291]
MIKLAKKRMSGLAVFGAVLFMVIQVVSNLYLPNLTSDIVNNGIAKGDIDYIWQAGFKMLGFSLISILAAICNVYLAAKTS
QGLGQKLRSDIYRKVINFSHDEMDQVGTSSLITRTTNDVVQIQNVAMMFLRMMIMAPIMLIGASFLAYQKNAQLTSIFVV
VLPLMAIFIGVVMYFAVPLFKAMQKKTDRINLVFREGLTGVRVIRAFRRDKFEQERFDDANLDYTQNAKKVYSIMSVMLP
VMTLIMSGTNIAITWMGGHLIADQAMQVGNLLAFMTYAMQILMSFMMLSMVFVFIPRAQASAVRINEVLDLQTPIENPEN
PKSFTDQTVSLAFDNVNFRYQNAEKLALEKIDFQASAGQTVAIIGGTGSGKSTLVNLIPRFYDVEAGQVQVDGLNVKDVT
LHDIHEQVAFVPQKANLFTGTIRENMQYGNPDATDDQIWHALEIAQSKDFVSELDGGLDSHVEQGGGNFSGGQRQRLAIA
RALVKRASVYVFDDSFSALDFKTDALLRKALKEDTEIQKSVVVIVGQRVSTVADADTILVLDEGQMVGKGTHAQLKATNA
TYQEIINSQIREGDGA

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=779796 QY867_RS05260 WP_251944611.1 1034984..1036714(+) (rcrP) [Latilactobacillus sakei strain A1291]
ATGATTAAACTTGCAAAAAAGAGAATGTCGGGCTTAGCCGTTTTCGGTGCTGTCTTATTCATGGTGATTCAAGTTGTCAG
TAACTTGTATCTCCCTAATTTGACGTCTGATATTGTCAATAACGGGATTGCCAAAGGTGATATTGATTATATCTGGCAAG
CCGGCTTCAAAATGCTCGGCTTTTCATTGATCAGTATCCTAGCCGCAATCTGTAACGTTTATTTAGCCGCTAAGACATCA
CAAGGTCTGGGTCAGAAATTACGATCAGATATTTATCGAAAGGTCATCAATTTCTCACACGATGAAATGGACCAAGTGGG
GACCTCGTCACTGATTACACGGACAACCAATGATGTTGTTCAAATTCAAAATGTGGCAATGATGTTCTTACGAATGATGA
TCATGGCCCCTATCATGTTGATTGGTGCCAGCTTCTTGGCTTACCAAAAGAACGCGCAATTAACGTCAATCTTCGTTGTT
GTCTTACCATTGATGGCAATCTTTATCGGTGTCGTGATGTACTTTGCCGTACCGCTTTTCAAAGCGATGCAAAAGAAGAC
TGACCGGATTAACTTAGTTTTCCGTGAAGGCTTAACAGGGGTGCGGGTAATCCGTGCATTCCGTCGCGATAAGTTCGAAC
AGGAACGTTTTGACGATGCGAACTTAGATTACACACAAAATGCTAAAAAGGTCTACAGTATCATGTCTGTCATGTTACCT
GTGATGACATTGATTATGAGTGGGACAAACATTGCAATCACTTGGATGGGTGGTCACTTAATTGCTGATCAAGCCATGCA
AGTGGGGAACTTATTAGCCTTCATGACTTATGCGATGCAAATCTTAATGAGTTTCATGATGCTTTCAATGGTTTTCGTCT
TCATTCCACGGGCACAAGCATCAGCCGTTCGGATTAATGAAGTCTTGGATTTACAAACACCAATTGAAAATCCAGAAAAT
CCCAAGAGTTTTACAGATCAAACTGTCAGCTTGGCCTTCGATAATGTTAACTTCCGCTACCAAAATGCAGAAAAATTAGC
CTTAGAGAAGATTGATTTCCAAGCATCTGCTGGTCAAACCGTTGCGATTATCGGGGGGACTGGTTCAGGTAAATCAACCT
TGGTTAACTTGATTCCGCGTTTTTACGACGTTGAAGCCGGCCAAGTCCAAGTTGATGGGTTAAATGTCAAAGATGTGACA
TTGCATGATATTCATGAACAAGTCGCATTTGTACCGCAAAAAGCCAATCTTTTTACAGGGACGATTCGCGAAAATATGCA
ATATGGGAATCCGGATGCAACTGATGATCAGATTTGGCATGCACTTGAAATTGCCCAATCGAAGGATTTCGTTAGCGAAC
TTGATGGTGGCTTAGACAGTCACGTTGAACAAGGTGGCGGTAACTTCTCAGGTGGTCAACGTCAACGATTAGCGATTGCC
CGAGCATTAGTTAAACGCGCATCGGTTTATGTCTTTGATGATTCATTTTCAGCTTTAGATTTCAAGACGGATGCCCTTTT
ACGCAAAGCCTTGAAGGAAGATACTGAAATTCAAAAGAGTGTCGTCGTCATTGTTGGACAACGGGTCTCAACGGTGGCTG
ATGCCGATACAATCTTGGTCTTAGATGAAGGCCAAATGGTTGGTAAAGGCACGCATGCCCAATTAAAGGCAACAAATGCA
ACTTACCAAGAAATTATCAATTCACAAATCAGAGAGGGGGATGGAGCCTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(348-495)

ABC transporter transmembrane region (ABC_membrane)

(15-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

42.376

97.917

0.415