Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QYM42_RS10010 Genome accession   NZ_CP129526
Coordinates   2042195..2043154 (-) Length   319 a.a.
NCBI ID   WP_228248345.1    Uniprot ID   -
Organism   Lactococcus lactis strain ZZ-2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2037195..2048154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM42_RS09990 (QYM42_09990) - 2037505..2038251 (-) 747 WP_017864945.1 tyrosine-protein phosphatase -
  QYM42_RS09995 (QYM42_09995) - 2038454..2040256 (-) 1803 WP_251899807.1 oligopeptide ABC transporter substrate-binding protein -
  QYM42_RS10000 (QYM42_10000) oppC 2040361..2041245 (-) 885 WP_058203992.1 murein tripeptide/oligopeptide ABC transporter permease OppC -
  QYM42_RS10005 (QYM42_10005) oppB 2041255..2042214 (-) 960 WP_015427010.1 murein tripeptide/oligopeptide ABC transporter permease OppB -
  QYM42_RS10010 (QYM42_10010) amiE 2042195..2043154 (-) 960 WP_228248345.1 murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppF Regulator
  QYM42_RS10015 (QYM42_10015) oppD 2043151..2044167 (-) 1017 WP_251899808.1 murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppD -
  QYM42_RS10020 (QYM42_10020) rplT 2044393..2044752 (-) 360 WP_003132352.1 50S ribosomal protein L20 -
  QYM42_RS10025 (QYM42_10025) rpmI 2044913..2045113 (-) 201 WP_003132353.1 50S ribosomal protein L35 -
  QYM42_RS10030 (QYM42_10030) infC 2045242..2045736 (-) 495 WP_003132354.1 translation initiation factor IF-3 -
  QYM42_RS10035 (QYM42_10035) - 2046199..2046327 (+) 129 WP_003132356.1 hypothetical protein -
  QYM42_RS10040 (QYM42_10040) - 2046346..2046894 (+) 549 WP_021469614.1 hypothetical protein -
  QYM42_RS10045 (QYM42_10045) - 2046905..2047609 (-) 705 WP_012898414.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 35988.24 Da        Isoelectric Point: 9.6303

>NTDB_id=779729 QYM42_RS10010 WP_228248345.1 2042195..2043154(-) (amiE) [Lactococcus lactis strain ZZ-2]
MSEILNLKDLKVYYPIRSGFFNRVTDNVLAVDGVDLTIHEGETVGLVGESGSGKSTIGKTIVGLEQMTSGQLIYKGQDVS
KKKIRNQLKYNKDVQMIFQDAFSSLNPRKTIYDIIAEPIRNFEKLDAKTENKRIHELLDIVGLPKQALEQYPFQFSGGQQ
QRIGIARAVATNPKLIVADEPVSALDLSVQAQVLNFMKLIQKNLGIAFLFISHDLGVVRHMTDNIAVMHNGRIVEKGTRR
DIFDEPQHIYTKRLLSAIPSIDVTRRAENRKNRLKVEQDFEDKKANFYDKDGHALPLQKLSQSHWAALPKGGENVESNY

Nucleotide


Download         Length: 960 bp        

>NTDB_id=779729 QYM42_RS10010 WP_228248345.1 2042195..2043154(-) (amiE) [Lactococcus lactis strain ZZ-2]
GTGAGCGAAATTCTTAATTTAAAGGACTTAAAAGTTTATTATCCTATTCGATCTGGTTTCTTTAATCGAGTGACAGATAA
TGTTTTAGCCGTTGATGGAGTAGATTTAACGATTCATGAAGGAGAAACTGTCGGTTTAGTTGGTGAATCTGGCTCTGGAA
AATCAACGATTGGTAAAACAATTGTTGGTTTAGAACAAATGACATCAGGACAATTGATTTACAAAGGACAAGATGTCAGC
AAAAAAAAGATAAGAAACCAGCTCAAATACAATAAAGATGTTCAAATGATTTTTCAAGATGCATTTTCGAGTTTGAATCC
ACGGAAAACAATTTACGATATCATTGCGGAGCCTATTCGAAATTTTGAAAAATTAGATGCTAAGACAGAAAATAAACGGA
TTCATGAATTATTGGATATTGTTGGACTACCTAAACAAGCTTTAGAACAGTATCCTTTCCAATTTTCTGGAGGTCAACAA
CAAAGAATTGGAATCGCACGGGCAGTTGCTACTAATCCTAAGTTAATTGTGGCAGATGAACCAGTTTCAGCATTAGACTT
ATCTGTTCAAGCTCAAGTTTTGAATTTCATGAAGCTCATTCAAAAGAACTTGGGAATTGCATTTCTTTTTATTTCTCATG
ATTTAGGGGTTGTCCGCCATATGACCGATAATATTGCGGTCATGCACAACGGTCGAATTGTCGAAAAAGGAACACGAAGA
GATATATTTGATGAGCCACAGCACATTTATACTAAACGACTCTTATCTGCTATCCCTTCGATTGATGTTACAAGAAGAGC
GGAAAATCGGAAAAACCGTCTAAAAGTTGAACAAGACTTTGAGGATAAAAAAGCAAACTTTTATGATAAAGATGGACACG
CTTTGCCCTTGCAAAAATTAAGTCAGAGCCATTGGGCAGCTTTGCCAAAAGGAGGGGAAAATGTGGAAAGTAATTATTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(32-182)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(234-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

36.254

100

0.376
  amiE Streptococcus thermophilus LMG 18311

36.254

100

0.376
  amiE Streptococcus thermophilus LMD-9

36.254

100

0.376
  amiF Streptococcus thermophilus LMG 18311

47.059

79.937

0.376
  amiF Streptococcus thermophilus LMD-9

47.059

79.937

0.376
  amiF Streptococcus salivarius strain HSISS4

45.247

82.445

0.373