Detailed information NTG0779721

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: QYM42_RS09465
• Genome accession: NZ_CP129526
• Coordinates: 1927593..1930097 (-)
• Length: 834 a.a.
• NCBI ID: WP_003132792.1
• Uniprot ID: Q9CEU4
• Organism: Lactococcus lactis strain ZZ-2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1922593..1935097

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYM42_RS09440 (QYM42_09440)	-	1923768..1924451 (+)	684	WP_003130398.1	lactate utilization protein C	-
QYM42_RS09445 (QYM42_09445)	-	1924524..1925237 (-)	714	WP_017864892.1	Bax inhibitor-1/YccA family protein	-
QYM42_RS09450 (QYM42_09450)	-	1925350..1926264 (-)	915	WP_012898318.1	diacylglycerol kinase family protein	-
QYM42_RS09455 (QYM42_09455)	-	1926421..1926933 (-)	513	WP_003132795.1	HD domain-containing protein	-
QYM42_RS09460 (QYM42_09460)	rpsT	1927266..1927499 (+)	234	WP_010906113.1	30S ribosomal protein S20	-
QYM42_RS09465 (QYM42_09465)	recD/recD2/recDB	1927593..1930097 (-)	2505	WP_003132792.1	ATP-dependent RecD-like DNA helicase	Machinery gene
QYM42_RS09470 (QYM42_09470)	-	1930094..1930687 (-)	594	WP_010906114.1	histidine phosphatase family protein	-
QYM42_RS09475 (QYM42_09475)	pheA	1930690..1931529 (-)	840	WP_023188548.1	prephenate dehydratase	-
QYM42_RS09480 (QYM42_09480)	-	1931531..1932019 (-)	489	WP_017864896.1	shikimate kinase	-
QYM42_RS09485 (QYM42_09485)	aroA	1932043..1933335 (-)	1293	WP_023188546.1	3-phosphoshikimate 1-carboxyvinyltransferase	-
QYM42_RS09490 (QYM42_09490)	-	1933456..1934520 (-)	1065	WP_251899787.1	prephenate dehydrogenase	-

Sequence

Protein

• Length: 834 a.a.
• Molecular weight: 92974.43 Da
• Isoelectric Point: 4.5085

>NTDB_id=779721 QYM42_RS09465 WP_003132792.1 1927593..1930097(-) (recD/recD2/recDB) [Lactococcus lactis strain ZZ-2]
MIEKTYFTGSIEAIFFSNPSNFYKVLLIEIDETNAEYDDFEIVVNGTIGDVVEGDSYTFYGQLTQHPKYGEQLQVSQYEK
AVPTSGAGLVKYFSSDKFPGIGKKTAEKIVETFPENTVDSILEAPEKLDGLLTLARKNSFIKRLRENHGMEKVLTKLAEY
GLPSKITFQIYELYKEETIEKIEENPYQLVEDVKGVGFKTADKIASSLGIEADSPNRFRAALMHEVNTHSQSTGDTYIEA
KNLLEMTIDLLEEARNVEVNPSAVAEEINGLIVDGKVQQEGTKIFENSLYFAEDGIRKSLTALTNRSGKDFADEKLLTVL
AEVERDLEITYDDLQKQAIIGAMNQQFFILTGGPGTGKTTIINGFIETYARLHQLDLDPDHYNDDVFPILLAAPTGRASR
RMNELTGLPAATIHRHLGLGQDEAEDALGNELSGALLIVDEFSMVDTWLANKLFQAIPGSMKVLLVGDADQLPSVGPGQI
FADLLKIPEIPSVKLDKIFRQGDDSTITDLAHHIKDGQLPSDFTAKKPDRSYFEVSANFVPQMVEQIASAWQKRGNNPFE
LQILAPMYKGMAGINAMNVLLQNLFNPLNDRLEFALGDMKFREGDKVLHLVNDAEANVFNGDLGQIVELIAAKYTDSKQD
ELVMDFDGQELTYPRAEWYKITLAYAMSIHKSQGSEFSTVIVPMVSSYSRMLERNLLYTAITRAKQSLILLGEERAFAQA
VAREGANRKTYLIERFMGENPAAKNLSVEIVSEKVTDKKERSDKEKKPAAPVELQGQIRSVSKKMPAQVEEISLFEDEEI
ETLDKGSLTEALILSGNFDPLIGLTQQDFAIFNK

Nucleotide

• Length: 2505 bp

>NTDB_id=779721 QYM42_RS09465 WP_003132792.1 1927593..1930097(-) (recD/recD2/recDB) [Lactococcus lactis strain ZZ-2]
ATGATTGAAAAAACTTATTTTACTGGTTCGATTGAGGCAATATTTTTCTCCAATCCCAGTAATTTTTATAAAGTTCTACT
CATTGAAATTGATGAAACTAATGCTGAATATGATGATTTTGAAATTGTGGTTAACGGGACAATTGGGGATGTGGTTGAAG
GAGATTCTTATACATTTTATGGTCAATTGACGCAGCATCCTAAATATGGGGAACAATTACAGGTCAGTCAATATGAAAAA
GCAGTGCCGACTTCTGGTGCTGGTTTAGTTAAATATTTTTCTTCAGATAAATTTCCTGGAATTGGTAAGAAAACGGCAGA
AAAAATTGTTGAAACTTTTCCTGAAAATACGGTAGATTCAATTTTAGAAGCGCCGGAAAAATTGGATGGTCTATTGACTC
TAGCCAGAAAAAATTCATTTATCAAACGATTACGTGAGAATCATGGAATGGAAAAAGTGCTGACCAAGCTTGCAGAATAT
GGCTTACCAAGCAAAATCACTTTTCAAATTTATGAACTTTATAAAGAAGAAACGATTGAAAAAATTGAGGAAAATCCTTA
TCAGCTTGTGGAAGATGTTAAGGGAGTTGGTTTTAAAACAGCTGATAAGATTGCAAGTAGTTTAGGAATTGAAGCGGATA
GCCCTAATCGATTTCGAGCGGCATTGATGCATGAGGTCAATACGCATTCGCAATCAACAGGCGATACTTACATTGAAGCC
AAAAATTTACTTGAGATGACGATAGACTTACTTGAAGAAGCTCGTAATGTCGAGGTCAACCCGTCTGCTGTTGCGGAGGA
AATTAATGGTTTAATAGTTGATGGAAAAGTGCAACAAGAAGGAACAAAAATATTTGAGAATTCCTTGTACTTCGCTGAGG
ACGGGATTCGGAAATCACTGACAGCATTAACTAATCGTTCGGGTAAAGATTTTGCTGATGAAAAGTTACTGACAGTATTG
GCTGAAGTTGAAAGAGATTTAGAAATTACTTATGATGATTTGCAAAAGCAAGCCATTATTGGTGCAATGAATCAGCAATT
TTTCATTTTGACTGGTGGACCAGGAACTGGTAAAACAACAATTATTAATGGTTTTATTGAAACTTATGCCCGTCTTCATC
AGCTAGATTTGGACCCAGACCATTATAATGATGACGTCTTTCCTATATTACTGGCAGCACCGACTGGTCGAGCTTCAAGA
CGGATGAATGAGTTGACTGGTCTTCCAGCAGCGACAATTCACCGCCATTTGGGTTTGGGACAAGATGAAGCAGAAGATGC
TCTTGGAAATGAATTGTCTGGTGCTCTTTTGATTGTTGACGAATTTTCTATGGTTGATACTTGGTTAGCTAATAAACTTT
TTCAAGCGATTCCTGGTTCAATGAAAGTTCTCCTTGTTGGAGATGCTGACCAGCTTCCTTCTGTGGGGCCAGGACAAATT
TTTGCGGATTTACTAAAAATTCCAGAAATTCCGTCAGTAAAATTGGATAAGATTTTTCGTCAAGGAGATGATTCTACCAT
TACTGATTTAGCTCATCACATCAAAGATGGACAATTGCCAAGTGATTTCACGGCGAAAAAACCTGACCGTTCTTATTTTG
AGGTCAGTGCTAATTTTGTTCCTCAGATGGTTGAACAAATCGCAAGTGCATGGCAAAAAAGAGGGAATAATCCTTTTGAA
TTACAAATCTTAGCACCCATGTATAAAGGAATGGCCGGGATTAATGCAATGAATGTTCTTTTGCAAAATCTCTTTAATCC
GCTTAATGATCGACTTGAATTCGCTTTGGGTGATATGAAATTTCGTGAAGGAGATAAAGTTCTTCATTTAGTAAATGATG
CTGAGGCCAATGTATTTAACGGAGATTTGGGACAAATCGTAGAATTGATTGCAGCAAAATATACTGACAGTAAACAAGAT
GAGTTGGTGATGGATTTTGATGGTCAAGAATTGACTTATCCAAGAGCGGAGTGGTATAAAATTACTCTGGCTTATGCGAT
GTCCATCCATAAATCTCAAGGTTCGGAGTTTTCCACGGTTATTGTGCCGATGGTTTCTTCTTATTCACGGATGTTAGAGC
GAAATTTGCTTTATACGGCAATTACAAGGGCTAAACAAAGTCTGATTTTACTTGGTGAAGAACGAGCTTTTGCACAAGCG
GTGGCGCGTGAAGGAGCGAATCGAAAGACCTATCTGATTGAGCGATTTATGGGAGAAAATCCAGCGGCTAAAAATCTGTC
AGTAGAAATTGTGAGTGAAAAAGTTACTGACAAAAAAGAAAGATCTGACAAAGAGAAGAAGCCTGCAGCGCCAGTAGAAT
TACAAGGGCAAATTCGTTCTGTCAGTAAAAAAATGCCAGCACAAGTAGAAGAAATTTCTTTATTTGAAGATGAAGAAATT
GAAACACTGGATAAGGGAAGCTTGACAGAAGCACTTATTTTGTCAGGAAATTTTGACCCTTTAATTGGTTTAACTCAACA
AGACTTTGCAATCTTTAATAAATAA

Domains

Predicted by InterProScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (577-646)

• AAA domain (AAA_30) (331-522)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (664-710)

• Helix-hairpin-helix containing domain (HHH_RecD2) (146-237)

3D structure

• AlphaFold DB: Q9CEU4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	42.175	90.408	0.381