Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   QYM42_RS01200 Genome accession   NZ_CP129526
Coordinates   237460..239295 (+) Length   611 a.a.
NCBI ID   WP_251900073.1    Uniprot ID   -
Organism   Lactococcus lactis strain ZZ-2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 232460..244295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM42_RS01185 (QYM42_01185) - 234482..235759 (-) 1278 WP_003131173.1 NAD(P)/FAD-dependent oxidoreductase -
  QYM42_RS01190 (QYM42_01190) - 235900..236727 (+) 828 WP_058221460.1 NAD(P)H-hydrate dehydratase -
  QYM42_RS01195 (QYM42_01195) - 236876..237289 (+) 414 WP_251900071.1 DUF1398 domain-containing protein -
  QYM42_RS01200 (QYM42_01200) rcrP 237460..239295 (+) 1836 WP_251900073.1 ABC transporter ATP-binding protein Regulator
  QYM42_RS01205 (QYM42_01205) rcrQ 239292..241169 (+) 1878 WP_021723426.1 ABC transporter ATP-binding protein Regulator
  QYM42_RS01210 (QYM42_01210) - 241266..241919 (+) 654 WP_058206210.1 YcjF family protein -
  QYM42_RS01215 (QYM42_01215) - 241965..242984 (-) 1020 WP_017864067.1 Gfo/Idh/MocA family oxidoreductase -
  QYM42_RS01220 (QYM42_01220) - 242968..243135 (-) 168 WP_003131184.1 hypothetical protein -
  QYM42_RS01225 (QYM42_01225) - 243323..243799 (-) 477 WP_003131187.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 68202.18 Da        Isoelectric Point: 9.0771

>NTDB_id=779671 QYM42_RS01200 WP_251900073.1 237460..239295(+) (rcrP) [Lactococcus lactis strain ZZ-2]
MLTIGRRYLNFWPVFWALFLLVIQVVTNLWLPTITADIINKGIGQSDMKYIWFMGLIMLFVSLASWLSAIGNVYFASKQS
QGLGLKLRHDLFKKVLFMDERNFQEFGDATLITRTTNDVTQLQNVFQTMLRMMLMAPMMLIGSIFMAWKLSHDLLLVFLI
ALPILTLAVVINIAISMPRFRSMQTKVDKINLIFQQGLTGVRVIRAFRRDQYEIDKFDEANRDLTHTSQVVLTTIAMLMP
IMTVILSFTNIGIVWFGAHLISKNMMEMGSLVAFLTYATQILMSFMQLSAVAVMVPRAQVSAVRVREILESKDKITDKNS
SISVEALKRQRLSSDGNDKLSESNSVRNSLALNHVSFKFDEAKRQALSDLSVNVAAGQTLAIIGGTGSGKSTILNLIARL
IDPTNGSVTIDGTDIRQISQYDLHEKVSFTQQKAQLFSGTIRSNLQFGKSDATDEEMWQALEIAQAANFVREQGGLELAV
EQNGANFSGGQKQRISIARTLIKEAEIYLFDDSFSALDFATDRQLRTAINHSEKHKNKIKVIVAQRIATVMSADQILVLE
NGIAVGLGTHESLAKSCPQYQETMQSQLSDDDLVKMGVSIAHLTARGGDDQ

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=779671 QYM42_RS01200 WP_251900073.1 237460..239295(+) (rcrP) [Lactococcus lactis strain ZZ-2]
ATGCTAACGATTGGAAGGCGATATTTAAATTTTTGGCCTGTATTTTGGGCACTTTTTTTGTTAGTTATTCAAGTTGTGAC
TAATCTTTGGCTTCCAACGATTACAGCGGATATTATCAATAAAGGCATTGGTCAATCTGATATGAAATATATCTGGTTTA
TGGGTCTAATTATGCTTTTCGTTTCTCTGGCCAGTTGGCTTTCGGCAATTGGAAATGTTTATTTTGCTTCCAAACAATCT
CAAGGATTGGGCCTGAAATTACGCCATGATTTATTTAAGAAAGTTTTATTCATGGACGAGCGCAACTTTCAGGAATTTGG
TGATGCAACTTTAATTACACGTACAACAAATGATGTGACTCAATTGCAAAATGTCTTTCAAACGATGTTACGAATGATGC
TCATGGCGCCAATGATGCTCATTGGTTCTATTTTCATGGCTTGGAAATTATCACATGATTTACTGCTGGTTTTTTTGATT
GCCCTGCCTATTTTAACTTTGGCTGTCGTTATTAATATTGCTATTTCCATGCCACGGTTTCGGTCAATGCAAACAAAAGT
TGATAAAATTAATCTGATTTTTCAACAAGGTTTAACTGGTGTTCGGGTGATTCGTGCTTTTAGACGAGACCAATATGAAA
TTGATAAATTTGATGAGGCTAACCGTGATTTGACACATACCAGTCAAGTGGTTTTGACGACGATTGCGATGTTAATGCCA
ATTATGACAGTTATTCTCAGTTTTACAAATATTGGAATTGTTTGGTTTGGCGCTCATCTTATCAGTAAAAATATGATGGA
AATGGGTTCATTAGTTGCCTTTTTGACCTATGCCACACAGATTTTGATGTCATTTATGCAATTATCAGCAGTTGCTGTCA
TGGTGCCACGAGCTCAGGTTTCAGCTGTTCGAGTTCGAGAAATTTTAGAATCTAAAGATAAAATTACTGATAAAAATTCG
AGCATATCCGTAGAGGCGCTAAAGCGCCAACGGCTATCCTCTGACGGAAACGACAAGTTGTCTGAAAGCAATTCTGTCCG
CAATTCTCTAGCTCTTAATCATGTATCTTTCAAATTTGATGAAGCAAAAAGACAAGCGCTAAGTGACTTGTCAGTAAATG
TAGCAGCTGGTCAGACCTTAGCAATTATTGGGGGGACTGGTTCTGGTAAATCAACGATTTTGAATTTGATTGCCAGATTA
ATTGACCCAACAAATGGAAGTGTCACAATTGATGGTACTGATATTCGCCAAATTTCACAGTATGACTTGCATGAAAAAGT
TTCTTTTACGCAACAAAAAGCTCAACTTTTTTCGGGAACTATCCGCTCGAATCTTCAATTTGGGAAAAGTGATGCAACAG
ATGAAGAAATGTGGCAAGCTTTGGAAATTGCACAAGCTGCTAATTTCGTTCGTGAACAAGGTGGACTTGAGCTGGCGGTC
GAACAAAATGGCGCAAATTTCTCTGGTGGTCAAAAACAAAGAATTTCGATTGCTAGAACCTTGATTAAAGAGGCAGAAAT
TTATCTATTTGACGATTCATTTTCGGCCTTGGACTTTGCTACTGACAGACAATTACGAACAGCTATTAATCATTCGGAAA
AACATAAAAATAAAATCAAGGTGATTGTGGCTCAAAGAATCGCAACCGTTATGTCAGCTGACCAAATCTTAGTTTTAGAA
AATGGAATTGCCGTAGGACTTGGTACTCATGAAAGTTTGGCAAAATCATGTCCGCAATATCAAGAAACAATGCAATCTCA
ACTCTCGGATGATGATTTGGTCAAGATGGGTGTTTCAATTGCACATTTGACCGCCAGAGGAGGTGATGACCAATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(15-285)

ABC transporter (ABC_tran)

(367-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

37.415

96.236

0.36