Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   POF63_RS01045 Genome accession   NZ_CP116708
Coordinates   165938..166870 (+) Length   310 a.a.
NCBI ID   WP_000138506.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain CNCTC 10/84 sCas9     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 160938..171870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POF63_RS01025 (POF63_01025) - 161150..162805 (+) 1656 WP_001118752.1 peptide ABC transporter substrate-binding protein -
  POF63_RS01030 (POF63_01030) - 162924..163838 (+) 915 WP_000598965.1 ABC transporter permease -
  POF63_RS01035 (POF63_01035) - 163848..164879 (+) 1032 WP_000764052.1 ABC transporter permease -
  POF63_RS01040 (POF63_01040) oppD 164892..165941 (+) 1050 WP_000410287.1 ABC transporter ATP-binding protein Regulator
  POF63_RS01045 (POF63_01045) amiF 165938..166870 (+) 933 WP_000138506.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 310 a.a.        Molecular weight: 34855.67 Da        Isoelectric Point: 6.7314

>NTDB_id=779294 POF63_RS01045 WP_000138506.1 165938..166870(+) (amiF) [Streptococcus agalactiae strain CNCTC 10/84 sCas9]
MTENRKKLVEVKNVSLTFNKGKANEVRAIDNVSFDIYEGEVFGLVGESGSGKTTVGRSILKLYDISDGEITFNGEVISHL
KGKALHSFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHKLAKSKSDRDSKVQALLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGTSDD
VYNNPIHPYTKSLLSAIPEPDPESERQRVHQPYNPAIEQDGQERQMHEITPGHFVLSTPQEAEEYKKQIL

Nucleotide


Download         Length: 933 bp        

>NTDB_id=779294 POF63_RS01045 WP_000138506.1 165938..166870(+) (amiF) [Streptococcus agalactiae strain CNCTC 10/84 sCas9]
ATGACTGAAAATCGAAAAAAATTAGTTGAAGTCAAAAATGTTTCTTTGACCTTCAATAAAGGAAAAGCTAATGAAGTGAG
AGCAATTGATAATGTTAGTTTTGACATTTATGAAGGTGAAGTGTTTGGATTAGTTGGGGAATCTGGATCAGGAAAGACAA
CCGTTGGACGTTCAATTTTAAAACTTTATGATATTTCTGATGGCGAAATTACCTTTAATGGAGAAGTGATCTCACATCTG
AAAGGTAAAGCATTACATAGTTTTCGTAAAGACGCTCAGATGATTTTTCAGGATCCTCAGGCTAGCTTAAACGGCCGTAT
GAAGATTCGTGATATCGTAGCAGAAGGTTTAGACATACATAAATTAGCTAAATCAAAATCAGATCGTGATAGTAAAGTTC
AGGCCCTATTAGATCTTGTAGGGTTAAATAAAGATCATTTAACACGTTATCCGCATGAATTTTCAGGTGGACAACGACAA
CGTATCGGGATTGCACGTGCTTTAGCAGTAGAGCCTAAATTTATCATTGCTGATGAACCAATATCTGCCTTAGATGTTTC
AATCCAAGCACAAGTTGTCAATTTAATGCAAAAATTGCAAAGAGAACAAGGATTGACTTATTTGTTTATCGCACATGATT
TGTCTATGGTAAAATACATTTCAGATCGTATCGGTGTTATGCATTGGGGAAAACTGTTAGAAGTTGGAACATCCGATGAT
GTTTATAACAATCCAATCCACCCTTATACGAAGAGTCTATTATCAGCTATTCCAGAACCAGATCCGGAGAGTGAACGTCA
ACGTGTTCACCAGCCGTATAATCCAGCTATTGAGCAAGACGGACAAGAACGTCAAATGCACGAGATTACACCTGGTCATT
TTGTTTTATCTACACCTCAAGAAGCTGAAGAATATAAAAAACAAATATTATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-267)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

54.545

99.355

0.542
  amiF Streptococcus thermophilus LMG 18311

54.221

99.355

0.539
  amiF Streptococcus salivarius strain HSISS4

54.426

98.387

0.535