Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   M2084_RS02135 Genome accession   NZ_AP025662
Coordinates   465409..465876 (-) Length   155 a.a.
NCBI ID   WP_000338336.1    Uniprot ID   -
Organism   Escherichia coli strain TUM20902     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 460409..470876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2084_RS02110 (TUM20902_04120) rpsG 460550..461020 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  M2084_RS02115 (TUM20902_04130) fusA 461117..463231 (+) 2115 WP_000124703.1 elongation factor G -
  M2084_RS02120 (TUM20902_04140) tuf 463302..464486 (+) 1185 WP_000031783.1 elongation factor Tu -
  M2084_RS02125 (TUM20902_04150) bfd 464669..464863 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  M2084_RS02130 (TUM20902_04160) bfr 464936..465412 (+) 477 WP_000675515.1 bacterioferritin -
  M2084_RS02135 (TUM20902_04170) pilD 465409..465876 (-) 468 WP_000338336.1 A24 family peptidase Machinery gene
  M2084_RS02140 (TUM20902_04180) rpsJ 466255..466566 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  M2084_RS02145 (TUM20902_04190) rplC 466599..467228 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  M2084_RS02150 (TUM20902_04200) rplD 467239..467844 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  M2084_RS02155 (TUM20902_04210) rplW 467841..468143 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  M2084_RS02160 (TUM20902_04220) rplB 468161..468982 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  M2084_RS02165 (TUM20902_04230) rpsS 468999..469277 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  M2084_RS02170 (TUM20902_04240) rplV 469292..469624 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  M2084_RS02175 (TUM20902_04250) rpsC 469642..470343 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  M2084_RS02180 (TUM20902_04260) rplP 470356..470766 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=77927 M2084_RS02135 WP_000338336.1 465409..465876(-) (pilD) [Escherichia coli strain TUM20902]
MDAALPFLILYACLSTLLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=77927 M2084_RS02135 WP_000338336.1 465409..465876(-) (pilD) [Escherichia coli strain TUM20902]
ATGGACGCTGCCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAACCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGGTTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGCCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTTTGCTTATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGTCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368

Multiple sequence alignment