Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   QY486_RS25975 Genome accession   NZ_CP129496
Coordinates   5605442..5605966 (-) Length   174 a.a.
NCBI ID   WP_003116136.1    Uniprot ID   A0A0H2ZIN8
Organism   Pseudomonas aeruginosa strain CW41     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5600442..5610966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY486_RS25960 (QY486_25960) aroB 5601570..5602676 (-) 1107 WP_004347587.1 3-dehydroquinate synthase -
  QY486_RS25965 (QY486_25965) aroK 5602726..5603244 (-) 519 WP_003095833.1 shikimate kinase AroK -
  QY486_RS25970 (QY486_25970) pilQ 5603256..5605388 (-) 2133 WP_003116137.1 type 4a pilus secretin PilQ Machinery gene
  QY486_RS25975 (QY486_25975) comL/pilP 5605442..5605966 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  QY486_RS25980 (QY486_25980) pilO 5605963..5606586 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  QY486_RS25985 (QY486_25985) pilN 5606583..5607179 (-) 597 WP_003116134.1 type 4a pilus biogenesis protein PilN -
  QY486_RS25990 (QY486_25990) pilM 5607179..5608243 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  QY486_RS25995 (QY486_25995) - 5608428..5610899 (+) 2472 WP_301423896.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19224.07 Da        Isoelectric Point: 9.7252

>NTDB_id=779161 QY486_RS25975 WP_003116136.1 5605442..5605966(-) (comL/pilP) [Pseudomonas aeruginosa strain CW41]
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKIDLTVRQKGN
KVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=779161 QY486_RS25975 WP_003116136.1 5605442..5605966(-) (comL/pilP) [Pseudomonas aeruginosa strain CW41]
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTCGGCGATCT
TCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTTCAGCCATATGAAGCTT
TTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAAGGCAAT
AAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCGGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGATGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.628

98.851

0.362