Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   OK431_RS26790 Genome accession   NZ_CP116682
Coordinates   5600716..5601273 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain HS337     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5595716..5606273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK431_RS26770 (OK431_26755) pilR 5596992..5598329 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  OK431_RS26775 (OK431_26760) thiO 5598375..5599469 (-) 1095 WP_003119424.1 glycine oxidase ThiO -
  OK431_RS26780 (OK431_26765) - 5599604..5600113 (+) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  OK431_RS26785 (OK431_26770) - 5600219..5600725 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  OK431_RS26790 (OK431_26775) pilV 5600716..5601273 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  OK431_RS26795 (OK431_26780) pilW 5601270..5602094 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  OK431_RS26800 (OK431_26785) pilX 5602091..5602678 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  OK431_RS26805 (OK431_26790) pilY1 5602690..5606181 (+) 3492 WP_010793785.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=779096 OK431_RS26790 WP_003119423.1 5600716..5601273(+) (pilV) [Pseudomonas aeruginosa strain HS337]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=779096 OK431_RS26790 WP_003119423.1 5600716..5601273(+) (pilV) [Pseudomonas aeruginosa strain HS337]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995