Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QYN05_RS22005 Genome accession   NZ_CP129406
Coordinates   4123345..4123770 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain PA272     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4118345..4128770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYN05_RS21985 ileS 4118502..4121333 (+) 2832 WP_034020463.1 isoleucine--tRNA ligase -
  QYN05_RS21990 lspA 4121326..4121835 (+) 510 WP_003102615.1 signal peptidase II -
  QYN05_RS21995 fkpB 4121828..4122268 (+) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  QYN05_RS22000 ispH 4122354..4123298 (+) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QYN05_RS22005 comF 4123345..4123770 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  QYN05_RS22010 pilY2 4123767..4124114 (-) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  QYN05_RS22015 pilY1 4124116..4127607 (-) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  QYN05_RS22020 pilX 4127619..4128206 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=779053 QYN05_RS22005 WP_003094721.1 4123345..4123770(-) (comF) [Pseudomonas aeruginosa strain PA272]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=779053 QYN05_RS22005 WP_003094721.1 4123345..4123770(-) (comF) [Pseudomonas aeruginosa strain PA272]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383