Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NY151_RS09930 Genome accession   NZ_CP116614
Coordinates   2237276..2238016 (-) Length   246 a.a.
NCBI ID   WP_005875257.1    Uniprot ID   A0A0E2LU95
Organism   Porphyromonas gingivalis strain ATCC 49417     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2232276..2243016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NY151_RS09910 (NY151_09910) - 2233155..2233736 (+) 582 WP_077083421.1 RNA polymerase sigma factor -
  NY151_RS09915 (NY151_09915) - 2233834..2233974 (+) 141 WP_021663364.1 hypothetical protein -
  NY151_RS09920 (NY151_09920) - 2234156..2235058 (+) 903 WP_012457384.1 nucleotidyltransferase family protein -
  NY151_RS09925 (NY151_09925) - 2235077..2237146 (+) 2070 WP_077083422.1 M13 family metallopeptidase -
  NY151_RS09930 (NY151_09930) comF 2237276..2238016 (-) 741 WP_005875257.1 ComF family protein Machinery gene
  NY151_RS09935 (NY151_09935) - 2238000..2238488 (-) 489 WP_077083423.1 regulatory protein RecX -
  NY151_RS09940 (NY151_09940) prmC 2238485..2239366 (-) 882 WP_077083424.1 peptide chain release factor N(5)-glutamine methyltransferase -
  NY151_RS09945 (NY151_09945) ribD 2239391..2240383 (+) 993 WP_005875259.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  NY151_RS11565 - 2240467..2240628 (+) 162 WP_369522884.1 DUF1661 domain-containing protein -
  NY151_RS09950 (NY151_09950) aspS 2240814..2242577 (+) 1764 WP_005875297.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27475.95 Da        Isoelectric Point: 10.0451

>NTDB_id=778853 NY151_RS09930 WP_005875257.1 2237276..2238016(-) (comF) [Porphyromonas gingivalis strain ATCC 49417]
MRKTANGTGRHIRLLIRKVLDLFFPRYCPVCDSLLAETEIGVCPRCMVRMPRYIEGMQYGLDRLNGDVYIDALYSLFIFK
EDGGVRPMIHALKYGGYSEIGEMLGRMAGRSYPFLSKDYDLIVPVPLHPRKQRKRGYNQALLIAQGLSRVTGIPVQEGLR
RKVYTDSQTGQSYSERKSAMKGKFALSPNTRVAGIRVLLVDDVLTTGATVQAAAEPLAEAFAAKIGVLVAAVTKRPSNWS
HYSDER

Nucleotide


Download         Length: 741 bp        

>NTDB_id=778853 NY151_RS09930 WP_005875257.1 2237276..2238016(-) (comF) [Porphyromonas gingivalis strain ATCC 49417]
ATGAGGAAGACAGCTAACGGTACGGGCCGGCATATCCGATTGCTGATTCGTAAGGTGTTGGATCTGTTTTTCCCTCGCTA
TTGTCCTGTATGCGACAGCTTGCTCGCCGAGACGGAGATCGGGGTCTGTCCTCGTTGCATGGTGAGAATGCCGCGGTATA
TCGAAGGGATGCAATATGGATTAGATCGTCTGAATGGGGATGTTTATATCGACGCGCTGTACAGCCTTTTTATTTTCAAA
GAGGACGGGGGTGTAAGGCCTATGATACACGCACTAAAATATGGAGGATACAGTGAGATCGGCGAAATGCTCGGACGAAT
GGCCGGCCGATCCTATCCTTTCCTGTCCAAGGATTACGATCTGATAGTGCCGGTTCCTTTACACCCACGCAAACAACGTA
AGCGTGGCTACAATCAGGCACTCCTCATCGCACAAGGATTAAGTCGCGTAACGGGAATACCTGTTCAAGAAGGTTTGCGC
AGAAAGGTATATACGGACAGTCAGACCGGACAGTCCTATTCGGAACGAAAGTCAGCCATGAAAGGGAAGTTTGCCCTCTC
CCCGAATACGCGCGTGGCCGGTATCCGTGTTCTTTTGGTGGACGATGTGCTGACTACCGGGGCTACGGTACAGGCTGCGG
CCGAGCCATTGGCAGAAGCCTTTGCGGCCAAGATCGGTGTATTGGTGGCAGCCGTTACCAAGCGTCCCTCGAATTGGTCT
CATTATTCTGATGAGCGATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2LU95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Porphyromonas gingivalis W83

100

100

1