Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QYE86_RS06720 Genome accession   NZ_CP129360
Coordinates   1325544..1326317 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain CKMM-401M     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1320544..1331317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYE86_RS06700 trmFO 1320887..1322194 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  QYE86_RS06705 xerC 1322612..1323508 (+) 897 WP_001015602.1 tyrosine recombinase XerC -
  QYE86_RS06710 hslV 1323505..1324050 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  QYE86_RS06715 hslU 1324116..1325519 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  QYE86_RS06720 codY 1325544..1326317 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QYE86_RS06725 - 1326368..1326460 (+) 93 WP_031788481.1 hypothetical protein -
  QYE86_RS06730 rpsB 1326659..1327426 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  QYE86_RS06735 - 1327460..1327573 (+) 114 WP_001789890.1 hypothetical protein -
  QYE86_RS06740 tsf 1327608..1328489 (+) 882 WP_044289264.1 translation elongation factor Ts -
  QYE86_RS06745 pyrH 1328626..1329348 (+) 723 WP_000057330.1 UMP kinase -
  QYE86_RS06750 frr 1329367..1329921 (+) 555 WP_001280006.1 ribosome recycling factor -
  QYE86_RS06755 - 1330294..1331064 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=778846 QYE86_RS06720 WP_000055337.1 1325544..1326317(+) (codY) [Staphylococcus aureus strain CKMM-401M]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=778846 QYE86_RS06720 WP_000055337.1 1325544..1326317(+) (codY) [Staphylococcus aureus strain CKMM-401M]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGACTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTTCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCGCGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428