Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NY149_RS01040 Genome accession   NZ_CP116613
Coordinates   244602..245342 (+) Length   246 a.a.
NCBI ID   WP_021677110.1    Uniprot ID   A0AAE9X738
Organism   Porphyromonas gingivalis strain HG1691old     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 239602..250342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NY149_RS01015 (NY149_01015) aspS 240044..241807 (-) 1764 WP_005875297.1 aspartate--tRNA ligase -
  NY149_RS01020 (NY149_01020) - 241993..242241 (-) 249 WP_144419659.1 DUF1661 domain-containing protein -
  NY149_RS01025 (NY149_01025) ribD 242238..243230 (-) 993 WP_021663369.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  NY149_RS01030 (NY149_01030) prmC 243255..244136 (+) 882 WP_021663368.1 peptide chain release factor N(5)-glutamine methyltransferase -
  NY149_RS01035 (NY149_01035) - 244133..244618 (+) 486 WP_271912871.1 regulatory protein RecX -
  NY149_RS01040 (NY149_01040) comF 244602..245342 (+) 741 WP_021677110.1 ComF family protein Machinery gene
  NY149_RS01045 (NY149_01045) - 245472..247541 (-) 2070 WP_061156572.1 M13 family metallopeptidase -
  NY149_RS01050 (NY149_01050) - 247560..248462 (-) 903 WP_021663365.1 nucleotidyltransferase family protein -
  NY149_RS01055 (NY149_01055) - 248644..248784 (-) 141 WP_018965219.1 hypothetical protein -
  NY149_RS01060 (NY149_01060) - 248882..249463 (-) 582 WP_021662032.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27447.90 Da        Isoelectric Point: 10.0451

>NTDB_id=778842 NY149_RS01040 WP_021677110.1 244602..245342(+) (comF) [Porphyromonas gingivalis strain HG1691old]
MRKTANGTGRHIRLLIRKALDLFFPRYCPVCDSLLAETEIGVCPRCMVRMPRYIEGMQYGLDRLNGDVYIDALYSLFIFK
EDGGVRPMIHALKYGGYSEIGEMLGRMAGRSYPFLSKDYDLIVPVPLHPRKQRKRGYNQALLIAQGLSRVTGIPVQEGLR
RKVYTDSQTGQSYSERKSAMKGKFALSPNTRVAGIRVLLVDDVLTTGATVQAAAEPLAEAFAAKIGVLVAAVTKRPSNWS
HYSDER

Nucleotide


Download         Length: 741 bp        

>NTDB_id=778842 NY149_RS01040 WP_021677110.1 244602..245342(+) (comF) [Porphyromonas gingivalis strain HG1691old]
ATGAGGAAGACAGCTAACGGTACGGGCCGGCATATCCGATTGCTGATTCGTAAGGCGTTGGATCTGTTTTTCCCTCGCTA
TTGTCCTGTATGCGACAGCTTGCTCGCCGAGACGGAGATCGGGGTCTGTCCTCGTTGCATGGTGAGAATGCCGCGGTATA
TCGAAGGGATGCAATATGGATTAGATCGTCTGAATGGGGATGTTTATATCGACGCGCTGTACAGCCTTTTTATTTTCAAA
GAGGACGGGGGTGTAAGGCCTATGATACACGCACTAAAATATGGAGGATACAGTGAGATCGGCGAAATGCTCGGACGAAT
GGCCGGCCGATCCTATCCTTTCCTGTCCAAGGATTACGATCTGATAGTGCCGGTTCCTTTACACCCACGCAAACAACGTA
AGCGTGGCTACAATCAGGCACTCCTCATCGCACAAGGATTAAGTCGCGTAACGGGAATACCTGTTCAAGAAGGTTTGCGC
AGAAAGGTATATACGGACAGTCAGACCGGACAGTCCTATTCGGAACGAAAGTCAGCCATGAAAGGGAAGTTTGCCCTCTC
CCCGAATACGCGCGTGGCCGGTATCCGTGTTCTTTTGGTGGACGATGTGCTGACTACCGGGGCTACGGTACAGGCTGCGG
CCGAGCCATTGGCAGAAGCCTTTGCGGCCAAGATCGGTGTATTGGTGGCAGCCGTTACCAAGCGTCCCTCGAATTGGTCT
CATTATTCTGATGAGCGATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Porphyromonas gingivalis W83

99.593

100

0.996