Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   PHA78_RS06720 Genome accession   NZ_CP116604
Coordinates   1400309..1401148 (-) Length   279 a.a.
NCBI ID   WP_029175343.1    Uniprot ID   -
Organism   Streptococcus sp. HN38     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1395309..1406148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHA78_RS06690 - 1396334..1397251 (-) 918 Protein_1275 MFS transporter -
  PHA78_RS06695 - 1397317..1398669 (-) 1353 WP_029943004.1 IS66-like element short variant transposase -
  PHA78_RS06700 - 1398623..1398829 (-) 207 WP_029178301.1 transposase -
  PHA78_RS06705 tnpB 1398880..1399230 (-) 351 WP_002941575.1 IS66 family insertion sequence element accessory protein TnpB -
  PHA78_RS06710 - 1399211..1399396 (-) 186 WP_029185337.1 hypothetical protein -
  PHA78_RS06715 - 1399479..1400123 (-) 645 Protein_1280 MFS transporter -
  PHA78_RS06720 endA 1400309..1401148 (-) 840 WP_029175343.1 DNA/RNA non-specific endonuclease Machinery gene
  PHA78_RS06725 - 1401178..1401369 (-) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  PHA78_RS06730 murA 1401362..1402645 (-) 1284 WP_272157877.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  PHA78_RS06735 - 1402670..1402894 (-) 225 WP_012775178.1 DUF1146 family protein -
  PHA78_RS06740 - 1402954..1403370 (-) 417 WP_105106449.1 F0F1 ATP synthase subunit epsilon -
  PHA78_RS06745 atpD 1403381..1404787 (-) 1407 WP_105124188.1 F0F1 ATP synthase subunit beta -
  PHA78_RS06750 - 1404807..1405685 (-) 879 WP_024398204.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30227.47 Da        Isoelectric Point: 6.7653

>NTDB_id=778767 PHA78_RS06720 WP_029175343.1 1400309..1401148(-) (endA) [Streptococcus sp. HN38]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVANYSYYVNQSKASESTPSQELASSVLTEDVKKQLGHSFDWNGA
GAFIINGNKTDLDASVSSKPYADNKTKTVQGETVPTVANALLAKSTRQYKSREETGNGSTSWTPPGWHQVQDLDGSYDHA
IDRGHLLGYALIGGLKGFDASTSNPKNIAVQTAWSNQARAEDSTGQNYFESQVRKALDKNKRVRYRVTLIYADEDDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEITVNE

Nucleotide


Download         Length: 840 bp        

>NTDB_id=778767 PHA78_RS06720 WP_029175343.1 1400309..1401148(-) (endA) [Streptococcus sp. HN38]
ATGGCGAAGAAAAATGTAAAAAAACAAGCGATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGTTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTAATTATTCCTATTATGTCAATCAGTCTAAGGCAAGCGAGAGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAGGATGTTAAGAAACAGCTTGGACATTCATTTGACTGGAATGGAGCG
GGTGCTTTTATCATCAACGGAAATAAGACTGATTTAGATGCTTCAGTCTCTAGCAAGCCTTATGCGGATAATAAGACAAA
GACTGTGCAGGGGGAAACGGTTCCAACAGTGGCAAATGCCCTTTTAGCCAAATCAACGCGACAGTATAAGAGTCGTGAAG
AAACAGGAAATGGTTCGACTTCATGGACTCCGCCTGGCTGGCATCAGGTACAGGATTTGGATGGATCCTATGATCATGCG
ATTGATAGGGGGCATCTGCTGGGCTATGCCTTGATTGGCGGTTTAAAAGGCTTTGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAATCAGGCAAGGGCTGAGGATTCGACGGGGCAAAACTATTTTGAGAGTCAAGTTC
GTAAAGCTTTGGATAAGAACAAACGTGTTCGTTACCGCGTGACCTTGATTTATGCTGATGAGGATGATTTGGTTCCAGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTATTTGTTCCAAATGTACAGAGCGGCCTCAG
CATTAACTACCATAGCGGTGAAATCACGGTGAATGAGTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

74.153

84.588

0.627
  endA Streptococcus pneumoniae D39

74.153

84.588

0.627
  endA Streptococcus pneumoniae R6

74.153

84.588

0.627
  endA Streptococcus pneumoniae TIGR4

74.153

84.588

0.627