Detailed information NTG0778711

Bioinformatically predicted

Overview

• Name: comGB
• Type: Machinery gene
• Locus tag: PNR82_RS06480
• Genome accession: NZ_CP116597
• Coordinates: 1295952..1297016 (+)
• Length: 354 a.a.
• NCBI ID: WP_243589276.1
• Uniprot ID: -
• Organism: Staphylococcus sp. NRL 22/194
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1290952..1302016

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PNR82_RS06450	-	1291376..1292836 (+)	1461	WP_243589271.1	rhomboid family intramembrane serine protease	-
PNR82_RS06455	-	1292817..1293020 (+)	204	WP_243589272.1	YqgQ family protein	-
PNR82_RS06460	-	1293017..1294003 (+)	987	WP_243589273.1	ROK family glucokinase	-
PNR82_RS06465	-	1294003..1294326 (+)	324	WP_103298547.1	MTH1187 family thiamine-binding protein	-
PNR82_RS06470	-	1294328..1294954 (+)	627	WP_243589274.1	MBL fold metallo-hydrolase	-
PNR82_RS06475	comGA	1295006..1295980 (+)	975	WP_243589275.1	competence type IV pilus ATPase ComGA	Machinery gene
PNR82_RS06480	comGB	1295952..1297016 (+)	1065	WP_243589276.1	competence type IV pilus assembly protein ComGB	Machinery gene
PNR82_RS06485	comGC	1297032..1297351 (+)	320	Protein_1238	competence type IV pilus major pilin ComGC	-
PNR82_RS06490	comGD	1297329..1297778 (+)	450	WP_272106506.1	competence type IV pilus minor pilin ComGD	-
PNR82_RS06495	-	1297765..1298058 (+)	294	WP_243589279.1	hypothetical protein	-
PNR82_RS06500	-	1298045..1298473 (+)	429	WP_243603697.1	hypothetical protein	-
PNR82_RS06505	-	1298632..1299150 (+)	519	WP_243590248.1	shikimate kinase	-
PNR82_RS06510	gcvT	1299359..1300451 (+)	1093	Protein_1243	glycine cleavage system aminomethyltransferase GcvT	-
PNR82_RS06515	gcvPA	1300468..1301820 (+)	1353	WP_243589281.1	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 41153.20 Da
• Isoelectric Point: 10.0022

>NTDB_id=778711 PNR82_RS06480 WP_243589276.1 1295952..1297016(+) (comGB) [Staphylococcus sp. NRL 22/194]
MKKLQINIYREKKKNLNSSQQIMLLENLNSLLKSGFTLFECFNFINLYFKYSDRTLSNRIIEGIKNGMACDEVLNLIGYP
QSIITQIYFAQKFGNIEEALDEAINYLKTNLNAKQQILKSIQYPLILIVIFIGMITILNYTVLPQFEQLYATMNVNLTFF
QKLLTQIIATLPTFILIITNLFIVLFIIVLIIQAKMDIAKKVKFLIQIPIFKGYYKLFKTYQIASELSLFYKNGITLQNI
VSIYINQKNNLFLNYLGEILLQNSNNGISLAKSLSEQKCFQEDLIKFIQQGEKSGKLDVELKLYSQILIQRIKNKALKHS
KIIQPVVFLFLGFFIISLYLVIMLPMFQLMQNIK

Nucleotide

• Length: 1065 bp

>NTDB_id=778711 PNR82_RS06480 WP_243589276.1 1295952..1297016(+) (comGB) [Staphylococcus sp. NRL 22/194]
GTGAAGAAATTGCAGATAAATATTTATAGAGAAAAGAAGAAAAATTTGAACTCTAGTCAACAAATTATGTTACTTGAAAA
TTTAAATAGTTTATTAAAAAGTGGTTTCACCTTATTTGAATGTTTCAATTTTATAAACTTATATTTTAAATATAGTGATA
GAACTTTAAGCAATAGGATTATTGAAGGTATCAAAAACGGGATGGCATGTGATGAGGTATTAAATCTAATTGGCTATCCT
CAATCAATCATTACACAAATATATTTCGCCCAAAAATTTGGGAACATAGAAGAAGCTCTCGACGAAGCTATTAATTATTT
AAAAACAAACTTAAATGCTAAACAACAAATATTAAAATCTATACAATATCCGTTAATTTTAATAGTTATCTTTATTGGCA
TGATAACTATATTAAACTATACTGTGCTCCCTCAGTTTGAACAACTTTACGCTACGATGAATGTGAATCTTACCTTTTTC
CAAAAACTTCTTACACAAATTATTGCTACTTTGCCTACTTTTATATTGATTATCACAAATCTTTTCATTGTCCTTTTCAT
AATTGTACTCATTATACAAGCTAAGATGGACATTGCTAAAAAAGTTAAATTTTTAATTCAAATACCGATTTTTAAAGGTT
ATTACAAATTATTTAAAACATATCAAATTGCAAGTGAACTTTCATTATTTTATAAAAATGGAATTACCTTACAAAATATC
GTATCTATATATATTAATCAAAAAAATAATCTTTTTTTAAATTATTTAGGTGAAATTCTATTACAAAATTCGAATAATGG
AATAAGCTTAGCTAAGAGTTTAAGTGAACAAAAATGCTTTCAAGAAGATTTAATTAAATTCATACAACAAGGAGAAAAAA
GTGGAAAATTAGATGTTGAACTTAAATTATATAGTCAAATATTAATCCAAAGAATTAAAAATAAAGCTTTAAAACATTCT
AAGATTATTCAACCAGTTGTCTTTTTATTTTTAGGATTTTTCATTATCAGTTTATATTTAGTTATCATGCTTCCCATGTT
TCAACTTATGCAAAATATTAAATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (226-345)

• Type II secretion system (T2SS), protein F (T2SSF) (25-144)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGB	Staphylococcus aureus MW2	50	100	0.503
comGB	Staphylococcus aureus N315	50	100	0.503