Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   MWM17_RS02135 Genome accession   NZ_AP025657
Coordinates   465643..466110 (-) Length   155 a.a.
NCBI ID   WP_000338336.1    Uniprot ID   -
Organism   Escherichia coli strain TUM13867     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 460643..471110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWM17_RS02110 (TUM13867_04100) rpsG 460784..461254 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  MWM17_RS02115 (TUM13867_04110) fusA 461351..463465 (+) 2115 WP_000124703.1 elongation factor G -
  MWM17_RS02120 (TUM13867_04120) tuf 463536..464720 (+) 1185 WP_000031783.1 elongation factor Tu -
  MWM17_RS02125 (TUM13867_04130) bfd 464903..465097 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  MWM17_RS02130 (TUM13867_04140) bfr 465170..465646 (+) 477 WP_000675515.1 bacterioferritin -
  MWM17_RS02135 (TUM13867_04150) pilD 465643..466110 (-) 468 WP_000338336.1 A24 family peptidase Machinery gene
  MWM17_RS02140 (TUM13867_04160) rpsJ 466489..466800 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  MWM17_RS02145 (TUM13867_04170) rplC 466833..467462 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  MWM17_RS02150 (TUM13867_04180) rplD 467473..468078 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  MWM17_RS02155 (TUM13867_04190) rplW 468075..468377 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  MWM17_RS02160 (TUM13867_04200) rplB 468395..469216 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  MWM17_RS02165 (TUM13867_04210) rpsS 469233..469511 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  MWM17_RS02170 (TUM13867_04220) rplV 469526..469858 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  MWM17_RS02175 (TUM13867_04230) rpsC 469876..470577 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  MWM17_RS02180 (TUM13867_04240) rplP 470590..471000 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=77845 MWM17_RS02135 WP_000338336.1 465643..466110(-) (pilD) [Escherichia coli strain TUM13867]
MDAALPFLILYACLSTLLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=77845 MWM17_RS02135 WP_000338336.1 465643..466110(-) (pilD) [Escherichia coli strain TUM13867]
ATGGACGCTGCCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAACCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGGTTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGCCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTTTGCTTATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGTCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368

Multiple sequence alignment