Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MWM16_RS09630 Genome accession   NZ_AP025617
Coordinates   1769419..1770684 (+) Length   421 a.a.
NCBI ID   WP_244344540.1    Uniprot ID   -
Organism   Thermus thermophilus strain SNM7-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1764419..1775684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWM16_RS09600 (TthSNM76_18860) - 1764624..1765808 (+) 1185 WP_224065365.1 ABC transporter substrate-binding protein -
  MWM16_RS09605 (TthSNM76_18870) folE 1765821..1766441 (-) 621 WP_008633832.1 GTP cyclohydrolase I FolE -
  MWM16_RS09610 (TthSNM76_18880) - 1766480..1767172 (-) 693 WP_011173892.1 gamma carbonic anhydrase family protein -
  MWM16_RS09615 (TthSNM76_18890) - 1767153..1767533 (-) 381 WP_011228981.1 NUDIX hydrolase -
  MWM16_RS09620 (TthSNM76_18900) - 1767524..1768387 (-) 864 WP_011228982.1 DUF1028 domain-containing protein -
  MWM16_RS09625 (TthSNM76_18910) - 1768711..1769388 (-) 678 WP_244344539.1 hypothetical protein -
  MWM16_RS09630 (TthSNM76_18920) rarA 1769419..1770684 (+) 1266 WP_244344540.1 replication-associated recombination protein A Machinery gene
  MWM16_RS09635 (TthSNM76_18930) - 1770635..1771204 (-) 570 WP_244344541.1 hypothetical protein -
  MWM16_RS09640 (TthSNM76_18940) - 1771231..1772016 (-) 786 WP_011173899.1 carbohydrate ABC transporter permease -
  MWM16_RS09645 (TthSNM76_18950) - 1772047..1773225 (+) 1179 Protein_1877 CoA transferase -
  MWM16_RS09655 (TthSNM76_18960) - 1773349..1774227 (+) 879 WP_244344542.1 ABC transporter ATP-binding protein -
  MWM16_RS09660 (TthSNM76_18970) - 1774220..1774990 (+) 771 WP_244344543.1 ABC transporter permease -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45994.74 Da        Isoelectric Point: 7.6004

>NTDB_id=77830 MWM16_RS09630 WP_244344540.1 1769419..1770684(+) (rarA) [Thermus thermophilus strain SNM7-6]
MGEVEPLAERLRPRSLDEVLGQPHLTGPKGLLRRMLEAGRLSSMVLFGPPGTGKTTLARLLAEGVGRPFLRLSAVEAGLK
EVRQAVEEARAKGGLVLFLDEIHRFNKAQQDALLPHLESGLLTLIGATAENPAFALVPALRSRLRFFPLRPLEEADLLAL
LKRALEDPRGLPGTPYEEEALRVLAQAAGGDARFALNTLELAASFGRVDLGSVREALGAERFGMDREGDRFYDLVSALHK
SLRGSHVDAALYYLARLLQGGADPRYLARRLIRVAVEDVGLADPLALRLAVAAKEAYEALGSPEGELALVEAAVYLALAP
KSNSLYAAWKKAQEAAKAHPEAEVPLNLRNAPTGLARALGHGEGYAYYHEDKEGSFAQRYLPEGLEGLTLFEATGEGWEE
RVRERLKALRERFQTARRRRG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=77830 MWM16_RS09630 WP_244344540.1 1769419..1770684(+) (rarA) [Thermus thermophilus strain SNM7-6]
ATGGGGGAAGTGGAACCCCTGGCCGAGCGCCTCAGGCCCCGAAGCTTAGACGAGGTCCTGGGCCAGCCCCACCTCACCGG
CCCCAAGGGGCTTCTGAGGCGGATGCTGGAGGCGGGGCGGCTCTCCTCCATGGTCCTCTTCGGCCCCCCGGGCACGGGCA
AGACCACCCTGGCCCGGCTCCTCGCCGAGGGGGTGGGGAGGCCCTTCCTAAGGCTCTCCGCGGTGGAGGCGGGGCTTAAG
GAGGTGCGCCAGGCGGTGGAGGAGGCCAGGGCAAAGGGGGGTCTCGTCCTCTTCCTGGACGAGATCCACCGCTTCAACAA
GGCCCAGCAGGACGCCCTCCTCCCCCACCTGGAGTCGGGCCTCCTCACCCTCATCGGGGCCACGGCGGAAAACCCCGCCT
TCGCCCTCGTCCCCGCCCTCCGCTCCCGCCTCCGCTTCTTCCCCTTGAGGCCCCTGGAGGAGGCCGACCTCCTCGCCCTC
CTCAAGCGGGCCCTGGAGGACCCAAGGGGCCTTCCCGGCACGCCCTACGAGGAGGAGGCCCTAAGGGTTCTCGCCCAGGC
GGCCGGGGGCGACGCCCGCTTCGCCCTGAACACCCTGGAGCTCGCCGCAAGCTTCGGCCGGGTGGACCTAGGGAGCGTGC
GGGAGGCCCTGGGGGCGGAGCGCTTCGGCATGGACCGGGAAGGGGACCGGTTTTACGACCTGGTCTCCGCCCTCCACAAG
TCCCTGCGGGGAAGCCACGTGGACGCCGCCCTCTACTACCTGGCGAGGCTCCTTCAGGGCGGGGCCGACCCCCGCTACCT
CGCCCGCAGGCTCATCCGGGTGGCGGTGGAGGACGTGGGCCTCGCCGACCCCCTGGCCCTCCGCCTCGCCGTGGCCGCCA
AGGAGGCCTACGAGGCCCTGGGAAGCCCGGAAGGGGAGCTCGCCCTGGTGGAGGCCGCCGTCTACCTGGCCCTGGCCCCC
AAGAGCAACAGCCTCTACGCCGCCTGGAAAAAGGCCCAGGAGGCGGCCAAGGCCCACCCCGAGGCCGAGGTCCCCCTGAA
CCTGAGAAACGCCCCCACCGGCCTCGCCCGCGCCCTGGGGCACGGGGAGGGGTACGCCTACTACCACGAGGACAAGGAGG
GAAGCTTCGCCCAGAGGTACCTCCCTGAGGGCCTGGAAGGCCTCACCCTCTTTGAGGCCACGGGGGAGGGGTGGGAGGAG
CGGGTGCGGGAAAGGCTCAAGGCGCTTCGGGAGCGGTTCCAAACCGCCAGGCGGCGGAGAGGCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(244-409)

ATPase family associated with various cellular activities (AAA) (AAA)

(44-144)

AAA C-terminal domain (AAA_assoc_2)

(176-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

38.48

100

0.385