Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   QYH60_RS05790 Genome accession   NZ_CP129292
Coordinates   1081037..1081816 (+) Length   259 a.a.
NCBI ID   WP_301401548.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain KMGR2-43     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1076037..1086816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYH60_RS05760 (QYH60_05760) - 1076074..1076421 (+) 348 WP_023189066.1 DUF722 domain-containing protein -
  QYH60_RS05765 (QYH60_05765) - 1076521..1078761 (+) 2241 WP_301401544.1 glycoside hydrolase domain-containing protein -
  QYH60_RS05770 (QYH60_05770) - 1078791..1079084 (-) 294 WP_025017162.1 hypothetical protein -
  QYH60_RS05775 (QYH60_05775) - 1079301..1079591 (+) 291 WP_124175219.1 hypothetical protein -
  QYH60_RS05780 (QYH60_05780) - 1079581..1079835 (+) 255 WP_023189062.1 phage holin -
  QYH60_RS05785 (QYH60_05785) - 1079947..1080843 (+) 897 WP_301401546.1 peptidoglycan amidohydrolase family protein -
  QYH60_RS05790 (QYH60_05790) endA 1081037..1081816 (+) 780 WP_301401548.1 DNA/RNA non-specific endonuclease Machinery gene
  QYH60_RS05795 (QYH60_05795) - 1081907..1082356 (-) 450 WP_025017176.1 GNAT family N-acetyltransferase -
  QYH60_RS05800 (QYH60_05800) - 1082505..1083620 (+) 1116 WP_023189057.1 AI-2E family transporter -
  QYH60_RS05805 (QYH60_05805) - 1083742..1085079 (+) 1338 WP_021722264.1 hemolysin family protein -
  QYH60_RS05810 (QYH60_05810) pflA 1085297..1086091 (+) 795 WP_003130318.1 pyruvate formate-lyase-activating protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29128.07 Da        Isoelectric Point: 9.3107

>NTDB_id=778181 QYH60_RS05790 WP_301401548.1 1081037..1081816(+) (endA) [Lactococcus lactis subsp. lactis strain KMGR2-43]
MKNKKIIPLLIVSIFILGGCANSQSDMDKSNHKWSQKDKTPSEELAKSVLTSSIKEQLKTDNIKFDHGSFIVNNNNNDLA
IINVVDPYAKNEIDIQGRPYLGEAVLPKSIQNNEKNNKDEKVIPQFGWGQKSNLKGFYKKAYTKGFLLNSKLIGGVKDFN
DSGSNMENIFTQTVWASEANDSSSKGQKYFENMIHKVQDKNMIIKYRVKALYDGSNLVPSGTEIEAKSDDFSLEIHVFIP
NVQPNLKVDYKTGQVTEVK

Nucleotide


Download         Length: 780 bp        

>NTDB_id=778181 QYH60_RS05790 WP_301401548.1 1081037..1081816(+) (endA) [Lactococcus lactis subsp. lactis strain KMGR2-43]
ATGAAGAACAAAAAAATTATCCCATTACTGATTGTCAGCATTTTTATCTTAGGGGGCTGTGCTAACAGTCAATCTGATAT
GGATAAAAGTAATCATAAATGGAGTCAAAAAGATAAGACACCCTCAGAAGAACTCGCAAAAAGTGTTCTGACTTCTTCAA
TAAAAGAACAATTAAAAACAGATAACATAAAATTTGATCACGGTTCATTTATCGTTAATAATAATAACAATGATTTAGCA
ATTATTAATGTTGTAGACCCATACGCTAAGAATGAAATAGATATTCAAGGGCGTCCTTATTTGGGTGAAGCAGTTCTCCC
AAAATCTATTCAAAATAATGAAAAGAATAATAAAGATGAAAAAGTGATTCCTCAATTTGGTTGGGGACAAAAATCTAACT
TGAAAGGCTTCTATAAAAAAGCTTATACTAAAGGTTTTTTGCTAAATAGCAAACTAATAGGTGGCGTTAAAGATTTCAAT
GATAGCGGGTCAAATATGGAAAATATATTTACTCAAACGGTTTGGGCGAGTGAAGCTAATGATTCAAGTTCCAAGGGACA
AAAATATTTTGAAAATATGATTCATAAAGTTCAAGATAAGAATATGATCATCAAGTATAGAGTGAAAGCACTCTATGATG
GAAGTAACCTTGTCCCATCAGGAACTGAAATAGAAGCAAAATCTGATGATTTTTCACTCGAGATACATGTTTTTATTCCA
AATGTTCAACCAAATCTTAAAGTAGATTATAAAACAGGTCAGGTCACTGAAGTCAAATAA

Domains

Predicted by InterProScan.

DNA/RNA non-specific endonuclease (Endonuclea_NS_2)

(92-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

42.174

88.803

0.375
  endA Streptococcus pneumoniae D39

42.174

88.803

0.375
  endA Streptococcus pneumoniae R6

42.174

88.803

0.375
  endA Streptococcus pneumoniae TIGR4

42.174

88.803

0.375