Detailed information NTG0077786

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MWM16_RS00565
• Genome accession: NZ_AP025617
• Coordinates: 105103..106164 (+)
• Length: 353 a.a.
• NCBI ID: WP_244344657.1
• Uniprot ID: -
• Organism: Thermus thermophilus strain SNM7-6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 100103..111164

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MWM16_RS00545 (TthSNM76_01060)	-	100611..101393 (+)	783	WP_244344655.1	RNA methyltransferase	-
MWM16_RS00550 (TthSNM76_01070)	groES	101491..101796 (+)	306	WP_011174076.1	co-chaperone GroES	-
MWM16_RS00555 (TthSNM76_01080)	groL	101809..103440 (+)	1632	WP_011174077.1	chaperonin GroEL	-
MWM16_RS00560 (TthSNM76_01090)	-	103504..105036 (-)	1533	WP_011174078.1	thermostable carboxypeptidase 1	-
MWM16_RS00565 (TthSNM76_01100)	pilD	105103..106164 (+)	1062	WP_244344657.1	A24 family peptidase	Machinery gene
MWM16_RS00570 (TthSNM76_01110)	-	106202..106705 (+)	504	WP_244344659.1	DUF2939 domain-containing protein	-
MWM16_RS00575 (TthSNM76_01120)	-	106719..107639 (+)	921	WP_011227819.1	nitroreductase family protein	-
MWM16_RS00580 (TthSNM76_01130)	-	107593..108369 (-)	777	WP_244341082.1	C40 family peptidase	-
MWM16_RS00585 (TthSNM76_01140)	-	108370..109128 (-)	759	WP_041443621.1	DUF721 domain-containing protein	-
MWM16_RS00590 (TthSNM76_01150)	recF	109113..110144 (-)	1032	WP_244341083.1	DNA replication and repair protein RecF	Machinery gene

Sequence

Protein

• Length: 353 a.a.
• Molecular weight: 37693.99 Da
• Isoelectric Point: 8.4420

>NTDB_id=77786 MWM16_RS00565 WP_244344657.1 105103..106164(+) (pilD) [Thermus thermophilus strain SNM7-6]
MWPLFALLLGLAVGSFLNVVVHRLPRGESVAYPPSRCPQCGHRLGPWDLVPVLSYLALKGRCRYCARPISPRYPLVEALT
GGLFLLASLFYPPGVEALLVFLFLAFLVALAFIDVDTFELPDPLTYGLLFLGLLASWALAFPLPFRESLDGSLMAAGGLA
LVAGYGNFFLRRFKEGRAEVPVGPHQVHMAALFGALLGPGVGMALAFLAWALSARTGRAVALPDRLTLPLLPLAFLLAPA
LGLDFLESLKGSLLAAGGLALAGGLYWAFRPLPEEEEPVAMGYGDVKLLGALGAWLGPYAFLALFLGVFAGALLGLLLRQ
RKLPFGPYLALGGVVAFFFGEALWGAYLRLLGV

Nucleotide

• Length: 1062 bp

>NTDB_id=77786 MWM16_RS00565 WP_244344657.1 105103..106164(+) (pilD) [Thermus thermophilus strain SNM7-6]
ATGTGGCCCCTCTTCGCCCTGCTCCTCGGCCTCGCGGTGGGTTCCTTTCTCAACGTGGTGGTCCACCGCCTGCCCCGGGG
GGAGTCCGTCGCCTACCCCCCGTCCCGCTGCCCCCAGTGCGGCCACCGCCTGGGGCCTTGGGACCTGGTCCCCGTCCTCT
CCTACCTCGCCCTAAAGGGGCGGTGCCGCTACTGCGCCCGTCCCATCTCCCCCCGCTACCCCCTGGTGGAGGCCCTCACG
GGGGGGCTTTTTCTCCTCGCAAGCCTCTTCTACCCCCCTGGGGTGGAGGCCCTCTTGGTCTTCCTCTTCCTCGCCTTTCT
CGTGGCCCTCGCCTTCATTGACGTGGACACCTTTGAGCTTCCCGATCCCCTCACCTACGGCCTCCTCTTCCTGGGGCTTT
TGGCCTCCTGGGCGCTGGCCTTCCCCCTCCCCTTTAGGGAGAGCCTGGACGGAAGCCTCATGGCCGCCGGGGGGCTCGCC
CTGGTGGCGGGTTACGGGAACTTTTTCCTGAGGCGCTTTAAGGAGGGGAGGGCCGAGGTCCCCGTGGGGCCCCACCAGGT
CCACATGGCGGCCCTCTTTGGGGCGCTCTTGGGCCCAGGGGTGGGGATGGCCCTCGCCTTCCTCGCTTGGGCCCTCTCCG
CCCGCACGGGGCGGGCGGTGGCCCTCCCCGACCGGCTCACCCTGCCCCTTTTGCCCCTCGCCTTCCTCCTTGCCCCCGCC
CTAGGCCTGGACTTCCTGGAAAGCCTTAAGGGAAGCCTCCTCGCTGCCGGGGGGCTCGCCCTCGCCGGGGGGCTTTACTG
GGCCTTCCGGCCCCTTCCCGAGGAGGAGGAGCCCGTGGCCATGGGCTACGGGGACGTGAAGCTTCTGGGGGCCCTCGGGG
CCTGGCTTGGCCCTTACGCCTTCCTCGCCCTCTTCCTCGGGGTCTTCGCCGGGGCGCTTCTGGGCCTTCTCCTTAGGCAA
AGGAAGCTCCCCTTCGGCCCCTACCTCGCCCTCGGGGGGGTGGTGGCCTTCTTCTTCGGCGAGGCCCTCTGGGGGGCGTA
CCTGCGCCTTCTGGGCGTTTGA

Domains

Predicted by InterProScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (8-88)

• Type IV leader peptidase family (Peptidase_A24) (207-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	44.648	100	0.484