Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SNM_RS10165 Genome accession   NZ_AP025613
Coordinates   1866674..1867939 (+) Length   421 a.a.
NCBI ID   WP_165739367.1    Uniprot ID   -
Organism   Thermus thermophilus strain SNM6-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1861674..1872939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNM_RS10135 (TthSNM66_19950) - 1861879..1863063 (+) 1185 WP_244346687.1 ABC transporter substrate-binding protein -
  SNM_RS10140 (TthSNM66_19960) folE 1863076..1863696 (-) 621 WP_008633832.1 GTP cyclohydrolase I FolE -
  SNM_RS10145 (TthSNM66_19970) - 1863735..1864427 (-) 693 WP_011173892.1 gamma carbonic anhydrase family protein -
  SNM_RS10150 (TthSNM66_19980) - 1864408..1864788 (-) 381 WP_011228981.1 NUDIX hydrolase -
  SNM_RS10155 (TthSNM66_19990) - 1864779..1865642 (-) 864 WP_011228982.1 DUF1028 domain-containing protein -
  SNM_RS10160 (TthSNM66_20000) - 1865966..1866643 (-) 678 WP_164926081.1 hypothetical protein -
  SNM_RS10165 (TthSNM66_20010) rarA 1866674..1867939 (+) 1266 WP_165739367.1 replication-associated recombination protein A Machinery gene
  SNM_RS10170 (TthSNM66_20020) - 1867890..1868459 (-) 570 WP_244346689.1 hypothetical protein -
  SNM_RS10175 (TthSNM66_20030) - 1868486..1869271 (-) 786 WP_011173899.1 carbohydrate ABC transporter permease -
  SNM_RS10180 (TthSNM66_20040) - 1869302..1870480 (+) 1179 Protein_1984 CoA transferase -
  SNM_RS10190 (TthSNM66_20050) - 1870604..1871482 (+) 879 WP_244346691.1 ABC transporter ATP-binding protein -
  SNM_RS10195 (TthSNM66_20060) - 1871475..1872245 (+) 771 WP_223965773.1 ABC transporter permease -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45964.71 Da        Isoelectric Point: 7.6004

>NTDB_id=77778 SNM_RS10165 WP_165739367.1 1866674..1867939(+) (rarA) [Thermus thermophilus strain SNM6-6]
MGEVEPLAERLRPRSLDEVLGQPHLTGPKGLLRRMLEAGRLSSMVLFGPPGTGKTTLARLLAEGVGRPFLRLSAVEAGLK
EVRQAVEEARAKGGLVLFLDEIHRFNKAQQDALLPHLESGLLTLIGATAENPAFALVPALRSRLRFFPLRPLEEADLLAL
LKRALEDPRGLPGTPYEEEALRVLAQAAGGDARFALNTLELAASFGRVDLGSVREALGAERFGMDREGDRFYDLVSALHK
SLRGSHVDAALYYLARLLQGGADPRYLARRLIRVAVEDVGLADPLALRLAVAAKEAYEALGSPEGELALVEAAVYLALAP
KSNSLYAAWKKAQEAAKAHPEAEVPLNLRNAPTGLARALGHGEGYAYYHEDKEGSFAQRYLPEGLEGLTLFEATGEGWEE
RVRERLKALRERFQAARRRRG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=77778 SNM_RS10165 WP_165739367.1 1866674..1867939(+) (rarA) [Thermus thermophilus strain SNM6-6]
ATGGGGGAAGTGGAACCCCTGGCCGAGCGCCTCAGGCCCCGAAGCTTAGACGAGGTCCTGGGCCAACCCCACCTCACCGG
CCCTAAAGGGCTTCTAAGGCGGATGCTGGAGGCGGGGCGGCTTTCCTCCATGGTCCTCTTCGGCCCCCCGGGCACGGGCA
AGACCACCCTGGCCCGGCTCCTCGCCGAGGGGGTGGGGAGGCCCTTCCTAAGGCTTTCCGCGGTGGAGGCGGGGCTTAAG
GAGGTGCGCCAGGCGGTGGAGGAGGCCAGGGCAAAGGGGGGTCTCGTCCTCTTCCTGGACGAGATCCACCGCTTCAACAA
GGCCCAGCAGGACGCCCTCCTCCCCCACCTGGAGTCGGGCCTCCTCACCCTCATCGGGGCCACGGCGGAAAACCCCGCCT
TCGCCCTCGTCCCCGCCCTCCGCTCCCGCCTCCGCTTCTTCCCCTTGAGGCCCCTGGAGGAGGCCGACCTCCTCGCCCTC
CTCAAGCGGGCCCTGGAGGACCCAAGGGGCCTTCCCGGCACGCCCTACGAGGAGGAGGCCCTAAGGGTTCTCGCCCAGGC
GGCCGGGGGCGACGCCCGCTTCGCCCTGAACACCCTGGAGCTCGCCGCAAGCTTCGGCCGGGTGGACCTAGGGAGCGTGC
GGGAGGCCCTGGGGGCGGAGCGCTTCGGCATGGACCGGGAAGGGGACCGGTTTTACGACCTGGTCTCCGCCCTCCACAAG
TCCCTGCGGGGAAGCCACGTGGACGCCGCCCTCTACTACCTGGCGAGGCTCCTTCAGGGCGGGGCCGACCCCCGCTACCT
CGCCCGCAGGCTCATCCGGGTGGCGGTGGAGGACGTGGGCCTCGCCGACCCCCTGGCCCTCCGCCTCGCCGTGGCCGCCA
AGGAGGCCTACGAGGCCCTGGGAAGCCCGGAAGGGGAGCTCGCCCTGGTGGAGGCCGCCGTCTACCTGGCCCTGGCCCCC
AAGAGCAACAGCCTCTACGCCGCCTGGAAAAAGGCCCAGGAGGCGGCCAAGGCCCACCCCGAGGCCGAGGTCCCCCTGAA
TCTGAGAAACGCCCCCACCGGCCTCGCCCGCGCCCTGGGGCACGGGGAGGGGTACGCCTACTACCACGAGGACAAGGAGG
GAAGCTTCGCCCAGAGGTACCTCCCTGAGGGCCTGGAAGGCCTCACCCTCTTTGAGGCCACGGGGGAGGGGTGGGAGGAG
CGGGTGCGGGAAAGGCTCAAGGCGCTTCGGGAGCGGTTCCAAGCCGCCAGGCGGCGGAGAGGCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(244-409)

AAA C-terminal domain (AAA_assoc_2)

(176-243)

ATPase family associated with various cellular activities (AAA) (AAA)

(44-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

38.48

100

0.385

Multiple sequence alignment