Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   PML95_RS09320 Genome accession   NZ_CP116507
Coordinates   1917872..1920310 (-) Length   812 a.a.
NCBI ID   WP_272163285.1    Uniprot ID   A0AAE9XNI0
Organism   Vagococcus lutrae strain K204-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1912872..1925310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PML95_RS09305 (PML95_09305) - 1914425..1915711 (-) 1287 WP_126760643.1 YeeE/YedE family protein -
  PML95_RS09310 (PML95_09310) - 1915897..1916781 (+) 885 WP_126760644.1 LysR family transcriptional regulator -
  PML95_RS09315 (PML95_09315) - 1916854..1917804 (+) 951 WP_272163284.1 diacylglycerol/lipid kinase family protein -
  PML95_RS09320 (PML95_09320) recD2 1917872..1920310 (-) 2439 WP_272163285.1 ATP-dependent RecD-like DNA helicase Machinery gene
  PML95_RS09325 (PML95_09325) - 1920325..1921374 (-) 1050 WP_248848768.1 SepM family pheromone-processing serine protease -
  PML95_RS09330 (PML95_09330) coaD 1921390..1921893 (-) 504 WP_126760648.1 pantetheine-phosphate adenylyltransferase -
  PML95_RS09335 (PML95_09335) rsmD 1921890..1922450 (-) 561 WP_126760649.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  PML95_RS09340 (PML95_09340) - 1922538..1922822 (-) 285 WP_023606469.1 YlbG family protein -
  PML95_RS09345 (PML95_09345) - 1922815..1923243 (-) 429 WP_023606468.1 YlbF family regulator -
  PML95_RS09350 (PML95_09350) - 1923245..1924381 (-) 1137 WP_272163286.1 CAP-associated domain-containing protein -

Sequence

Protein


Download         Length: 812 a.a.        Molecular weight: 91289.03 Da        Isoelectric Point: 4.4904

>NTDB_id=777717 PML95_RS09320 WP_272163285.1 1917872..1920310(-) (recD2) [Vagococcus lutrae strain K204-1]
MVESEKDLQHTPKIIGRIQAIFYQNPTNFYKVMLIEVEESEPSIDELEMVVTGNFGDMMEGESYQFSGQFVTHPKYGRQF
QVERYEQVKPTSANGLIDYLSGDNFPGIGKKTAEKLVDYFGEETIDVIMNDTERLDALDFLNKKRKDTIISGVKSNYGSE
KILIQLNEWGFGSQLAMTIFQKYQEQTLTLLEENPYRLIEDIEGIAFKKADKLAEQLNIAANSPERFQAAILTELLSYSL
SEGHTYIEAQVLLEKVVTLLESSRRYPVELGDVADQIIALIDLGKMQQEGTKLFHNSLFYAEWGVSHAIHRLLKRKQSID
YDEATILASIKQMETELGIAYGPSQKTALIEGVQSSFFILTGGPGTGKTTVINGLVRLFSELNELSLDINDYHNEVFPIL
LAAPTGRAAKRMSETTGLPAKTIHRLLGLTGQEMHPEEIANELEGSLLILDEMSMVDTWLANALFKAIPTNMQVIIVGDK
DQLPSVGPGQVLHDLLSIPMLPQCELTDIYRQEDGSSIIALAHAIKEGTLPSDFTRNQKDRSFIAGNTYQIEEMIRQIVV
KAAEKGFTASDIQVLAPMYRGPAGIDRLNKMLQEVLNPNESGRRKEVTWFETVYRIGDKVLQLVNVPENQVYNGDIGEIT
GIILAKEHEDKVDVLVVDFDGIEVEYPRNQWQQLTLAYCCSIHKSQGSEYPLVILPMVNGYYRMLQRNLLYTAITRSQER
LILLGELEAYETAVKHEGANRQTALKERIMAETFPSTTSLDTQSQEESIPKEEIAQEQLETQASFILTKELILSGAVDPM
IGMEGITPFDYI

Nucleotide


Download         Length: 2439 bp        

>NTDB_id=777717 PML95_RS09320 WP_272163285.1 1917872..1920310(-) (recD2) [Vagococcus lutrae strain K204-1]
ATGGTAGAAAGTGAAAAAGATTTACAACATACGCCTAAAATAATAGGACGGATTCAAGCCATCTTTTATCAAAATCCTAC
TAATTTTTATAAAGTGATGTTGATTGAAGTGGAAGAAAGCGAGCCGTCAATTGATGAATTAGAAATGGTTGTAACAGGAA
ATTTTGGCGATATGATGGAAGGAGAAAGTTACCAGTTTTCTGGACAGTTTGTCACACATCCTAAGTATGGCCGTCAATTC
CAAGTGGAACGTTATGAACAGGTAAAACCAACCAGTGCTAATGGTTTAATTGACTATTTATCTGGGGATAACTTTCCCGG
AATTGGAAAAAAAACAGCTGAAAAATTAGTAGATTATTTTGGCGAAGAAACAATTGATGTCATTATGAATGATACTGAAA
GATTAGACGCGTTAGATTTTTTAAATAAAAAACGAAAAGATACGATTATATCGGGAGTTAAAAGTAATTACGGGTCAGAA
AAAATCCTTATTCAACTGAATGAATGGGGATTTGGTAGTCAATTAGCCATGACTATCTTTCAAAAGTATCAGGAACAAAC
ATTAACCCTCTTAGAAGAGAATCCTTATCGCTTGATTGAAGATATTGAAGGGATTGCGTTTAAAAAAGCTGATAAGTTAG
CAGAACAATTAAATATTGCCGCGAATTCACCAGAGCGTTTTCAAGCGGCTATTTTAACAGAACTGCTGTCGTATTCATTA
AGTGAAGGACACACGTATATTGAAGCGCAAGTATTATTAGAGAAAGTCGTAACACTGTTAGAATCATCCCGTCGTTATCC
GGTGGAGCTTGGTGATGTAGCCGATCAAATCATTGCTTTGATTGATTTAGGAAAAATGCAGCAAGAAGGAACAAAGCTTT
TTCATAACAGTTTATTCTATGCAGAATGGGGCGTTTCACATGCCATTCATCGCTTACTCAAACGTAAACAATCAATTGAT
TATGATGAAGCAACTATTTTAGCATCCATTAAGCAAATGGAGACGGAATTAGGCATTGCTTATGGCCCTTCGCAAAAGAC
AGCTTTGATTGAAGGCGTTCAGTCTTCTTTCTTTATCTTGACAGGTGGCCCTGGTACAGGGAAAACGACGGTTATTAATG
GCCTCGTCCGATTATTCTCAGAGCTTAATGAGCTTTCTTTAGATATCAATGATTATCATAATGAGGTCTTTCCTATCTTA
TTAGCAGCGCCGACTGGTCGGGCAGCAAAGCGAATGAGTGAAACGACTGGATTACCGGCGAAGACGATACATCGTTTGCT
AGGATTAACCGGACAAGAAATGCATCCAGAAGAAATTGCAAATGAATTAGAAGGTAGTTTGCTGATTTTAGATGAAATGT
CGATGGTCGATACGTGGTTGGCAAATGCACTATTTAAAGCGATACCTACCAATATGCAAGTGATTATAGTTGGAGATAAA
GACCAGCTGCCGTCTGTTGGGCCCGGTCAGGTTTTACACGATTTGCTATCGATTCCCATGCTACCTCAATGTGAGTTAAC
AGATATTTATCGACAAGAAGATGGTTCGTCAATTATTGCTTTAGCACATGCGATTAAAGAAGGGACGTTGCCTAGTGATT
TTACTCGTAATCAGAAAGACCGTTCTTTTATTGCAGGCAACACGTATCAAATAGAAGAAATGATTCGTCAAATTGTGGTC
AAAGCTGCAGAAAAAGGTTTTACAGCTTCCGATATACAAGTTTTAGCACCGATGTATCGCGGACCAGCTGGCATTGACCG
ATTGAATAAAATGTTACAAGAAGTGTTAAATCCTAATGAAAGTGGTCGTCGTAAAGAAGTAACGTGGTTTGAAACTGTTT
ATCGAATTGGTGATAAGGTTCTTCAACTGGTTAATGTTCCGGAAAATCAAGTTTACAATGGCGATATTGGAGAAATTACT
GGTATCATCTTAGCGAAAGAGCACGAAGATAAAGTGGATGTCTTGGTAGTCGATTTTGATGGAATAGAAGTGGAATATCC
ACGTAATCAGTGGCAGCAACTCACACTTGCCTATTGCTGTTCTATTCATAAGTCACAAGGGAGTGAATATCCGCTTGTGA
TTTTGCCAATGGTTAATGGTTATTATCGAATGTTACAGCGTAATTTATTGTATACGGCGATTACGCGTAGTCAAGAGCGT
TTGATTTTATTGGGCGAACTGGAAGCTTATGAAACAGCTGTCAAGCATGAAGGTGCTAATCGTCAAACTGCTTTGAAAGA
ACGGATTATGGCAGAAACATTTCCGAGTACAACGTCACTTGATACCCAATCTCAAGAAGAAAGTATTCCTAAAGAAGAAA
TAGCTCAAGAACAACTTGAAACGCAAGCGTCATTTATCTTAACAAAAGAGTTAATTCTTTCTGGTGCCGTTGACCCTATG
ATTGGAATGGAAGGTATTACACCGTTTGATTACATTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-246)

AAA domain (AAA_30)

(342-544)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(588-659)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(677-724)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.63

99.754

0.495