Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   PML89_RS08240 Genome accession   NZ_CP116503
Coordinates   1708760..1711198 (+) Length   812 a.a.
NCBI ID   WP_252999386.1    Uniprot ID   -
Organism   Vagococcus lutrae strain K136-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1703760..1716198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PML89_RS08210 (PML89_08210) - 1704689..1705825 (+) 1137 WP_252999384.1 CAP-associated domain-containing protein -
  PML89_RS08215 (PML89_08215) - 1705827..1706255 (+) 429 WP_023606468.1 YlbF family regulator -
  PML89_RS08220 (PML89_08220) - 1706248..1706532 (+) 285 WP_023606469.1 YlbG family protein -
  PML89_RS08225 (PML89_08225) rsmD 1706620..1707180 (+) 561 WP_252999385.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  PML89_RS08230 (PML89_08230) coaD 1707177..1707680 (+) 504 WP_126760648.1 pantetheine-phosphate adenylyltransferase -
  PML89_RS08235 (PML89_08235) - 1707696..1708745 (+) 1050 WP_248848768.1 SepM family pheromone-processing serine protease -
  PML89_RS08240 (PML89_08240) recD2 1708760..1711198 (+) 2439 WP_252999386.1 ATP-dependent RecD-like DNA helicase Machinery gene
  PML89_RS08245 (PML89_08245) - 1711266..1712216 (-) 951 WP_252999387.1 diacylglycerol/lipid kinase family protein -
  PML89_RS08250 (PML89_08250) - 1712289..1713173 (-) 885 WP_248855950.1 LysR family transcriptional regulator -
  PML89_RS08255 (PML89_08255) - 1713359..1714645 (+) 1287 WP_126760643.1 YeeE/YedE family protein -

Sequence

Protein


Download         Length: 812 a.a.        Molecular weight: 91258.12 Da        Isoelectric Point: 4.5793

>NTDB_id=777683 PML89_RS08240 WP_252999386.1 1708760..1711198(+) (recD2) [Vagococcus lutrae strain K136-2]
MVESEKDLHHTPKIIGRIQAIFYQNPTNFYKVMLIEVEESEPSIDELEMVVTGNFGDMMEGESYQFSGQFVTHPKYGRQF
QVERYEQVKPTSANGLIDYLSGDNFPGIGKKTAEKLVDYFGEETIDVIMNDTERLDALDFLNKKRKDTIISGVKSNYGSE
KILIQLNEWGFGSQLAMTIFQKYQEQTLTLLEENPYRLIEDIEGIAFKKADKLAEHLNIAANAPERFQAAILTELLSYSL
SEGHTYIEAQVLLEKVVTLLESSRRYPVELGDVADQIIALIDLGKMQQEGTKLFHNSLFYAEWGVSHAIHRLLKRKQSID
YDEATILASIKQMETELGIAYGPSQKTALIEGVQSSFFILTGGPGTGKTTVINGLVRLFSELNELSLDINDYHNEVFPIL
LAAPTGRAAKRMSETTGLPAKTIHRLLGLTGQEMHPEEIANELEGSLLILDEMSMVDTWLANALFKAIPTNMQVIIVGDK
DQLPSVGPGQVLHDLLSIPMLPQCELTDIYRQEDGSSIIALAHAIKEGTLPSDFTRNQKDRSFIAGNTYQIEEMIRQIVV
KAAEKGFTASDIQVLAPMYRGPAGIDRLNKMLQEVLNPNESGRRKEVTWFETVYRIGDKVLQLVNVPENQVYNGDIGEIT
GIILAKEHEDKVDVLVVDFDGIEVEYPRNQWQQLTLAYCCSIHKSQGSEYPLVILPMVNGYYRMLQRNLLYTAITRSQER
LILLGELEAYETAVKHEGANRQTALKARIMAETFPSTTSLDRQSQVESIPKEEIAQEQLETQASFILTKELILSGAVDPM
IGMEGITPFDYI

Nucleotide


Download         Length: 2439 bp        

>NTDB_id=777683 PML89_RS08240 WP_252999386.1 1708760..1711198(+) (recD2) [Vagococcus lutrae strain K136-2]
ATGGTAGAAAGTGAAAAAGATTTACATCATACGCCTAAAATAATAGGACGGATTCAAGCCATCTTTTATCAAAATCCTAC
TAATTTTTATAAAGTGATGTTGATTGAAGTGGAAGAAAGCGAGCCGTCAATTGATGAATTAGAAATGGTTGTAACAGGAA
ATTTTGGCGATATGATGGAAGGAGAAAGCTACCAGTTTTCTGGACAGTTTGTCACACATCCTAAGTATGGCCGTCAATTC
CAAGTGGAACGTTATGAACAGGTAAAACCAACCAGTGCTAATGGTTTAATTGACTATTTATCTGGGGATAACTTTCCCGG
AATTGGAAAAAAAACAGCTGAAAAATTAGTAGATTATTTTGGCGAAGAAACAATTGATGTCATTATGAATGATACTGAAA
GATTAGACGCGTTAGATTTTTTAAATAAAAAACGAAAAGATACGATTATATCGGGAGTTAAAAGTAATTACGGGTCAGAA
AAAATCCTTATTCAACTGAATGAATGGGGATTTGGTAGTCAATTAGCCATGACTATCTTTCAAAAGTATCAGGAACAAAC
ATTAACCCTCTTAGAAGAGAATCCTTATCGCTTGATTGAAGATATTGAAGGGATTGCGTTTAAAAAAGCTGATAAGTTAG
CAGAACATTTAAATATTGCCGCGAATGCACCAGAGCGTTTTCAAGCGGCTATTTTAACAGAGCTGCTGTCATATTCATTA
AGTGAAGGACACACGTATATTGAAGCGCAAGTATTATTAGAGAAAGTCGTAACACTGTTAGAATCATCCCGACGTTATCC
GGTGGAGCTTGGTGATGTAGCCGATCAAATCATTGCTTTGATTGATTTAGGAAAAATGCAGCAAGAAGGAACAAAGCTTT
TTCATAACAGTTTATTCTATGCAGAATGGGGCGTTTCACATGCCATTCATCGCTTACTTAAACGTAAACAATCAATTGAT
TATGATGAAGCAACTATTTTAGCATCCATTAAGCAAATGGAGACGGAATTAGGCATTGCTTATGGCCCTTCGCAAAAGAC
AGCTTTGATTGAAGGCGTTCAGTCTTCTTTCTTTATCTTGACAGGTGGCCCTGGTACAGGGAAAACGACGGTTATTAATG
GCCTCGTCCGATTATTCTCAGAGCTTAATGAGCTTTCTTTAGATATCAATGATTATCATAATGAGGTCTTTCCTATCTTA
TTAGCAGCGCCGACTGGTCGGGCAGCAAAGCGAATGAGTGAAACGACTGGATTACCGGCGAAGACGATACATCGTTTGCT
AGGATTAACCGGACAAGAAATGCATCCAGAAGAAATTGCAAATGAATTAGAAGGTAGTTTGCTGATTTTAGATGAAATGT
CGATGGTCGATACGTGGTTGGCAAATGCACTATTTAAAGCGATACCTACCAATATGCAAGTGATTATAGTTGGAGATAAA
GACCAGCTGCCGTCTGTTGGGCCCGGTCAGGTTTTACACGATTTGCTATCGATTCCCATGCTACCTCAATGTGAGTTAAC
AGATATTTATCGACAAGAAGATGGTTCGTCAATTATTGCTTTAGCACATGCGATTAAAGAAGGGACGTTGCCTAGTGATT
TTACTCGTAATCAAAAAGACCGTTCTTTTATTGCAGGCAACACGTATCAAATAGAAGAAATGATTCGTCAAATTGTGGTC
AAAGCTGCAGAAAAAGGTTTTACAGCTTCCGATATACAAGTTTTAGCACCGATGTATCGCGGACCAGCTGGCATTGACCG
ATTGAATAAAATGTTACAAGAAGTGTTAAATCCTAATGAAAGTGGTCGTCGTAAAGAAGTAACGTGGTTTGAAACTGTTT
ATCGAATTGGTGATAAGGTTCTTCAACTGGTTAATGTTCCAGAAAATCAAGTTTACAATGGCGATATTGGAGAAATTACT
GGTATTATCTTAGCAAAAGAGCATGAAGATAAAGTGGATGTCTTGGTAGTCGATTTTGATGGAATAGAAGTGGAATATCC
ACGTAATCAGTGGCAGCAACTCACACTTGCCTATTGCTGTTCTATTCATAAGTCACAAGGGAGTGAATACCCGCTTGTGA
TTTTGCCAATGGTTAATGGTTATTATCGAATGTTACAGCGTAATTTATTGTATACGGCGATTACGCGTAGTCAAGAGCGT
TTGATTTTATTGGGCGAACTGGAAGCTTATGAAACAGCTGTCAAGCATGAAGGTGCTAATCGTCAAACTGCTTTGAAAGC
ACGGATTATGGCAGAAACATTTCCGAGTACAACGTCACTTGATAGGCAATCTCAAGTAGAAAGTATTCCTAAAGAAGAAA
TAGCTCAAGAACAACTTGAAACGCAAGCGTCATTTATCTTAACAAAAGAGTTAATTCTTTCTGGTGCCGTTGACCCTATG
ATTGGAATGGAAGGTATTACACCGTTTGATTACATTTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(588-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-246)

AAA domain (AAA_30)

(342-544)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(677-724)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.63

99.754

0.495