Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QYC25_RS02225 Genome accession   NZ_CP129252
Coordinates   481052..481519 (-) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain STEC1585     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 476052..486519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC25_RS02200 (QYC25_02200) rpsG 476193..476663 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  QYC25_RS02205 (QYC25_02205) fusA 476760..478874 (+) 2115 WP_000124700.1 elongation factor G -
  QYC25_RS02210 (QYC25_02210) tuf 478945..480129 (+) 1185 WP_000031783.1 elongation factor Tu -
  QYC25_RS02215 (QYC25_02215) bfd 480312..480506 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  QYC25_RS02220 (QYC25_02220) bfr 480579..481055 (+) 477 WP_000675515.1 bacterioferritin -
  QYC25_RS02225 (QYC25_02225) pilD 481052..481519 (-) 468 WP_000339836.1 A24 family peptidase Machinery gene
  QYC25_RS02230 (QYC25_02230) rpsJ 481898..482209 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  QYC25_RS02235 (QYC25_02235) rplC 482242..482871 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  QYC25_RS02240 (QYC25_02240) rplD 482882..483487 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  QYC25_RS02245 (QYC25_02245) rplW 483484..483786 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  QYC25_RS02250 (QYC25_02250) rplB 483804..484625 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  QYC25_RS02255 (QYC25_02255) rpsS 484642..484920 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  QYC25_RS02260 (QYC25_02260) rplV 484935..485267 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  QYC25_RS02265 (QYC25_02265) rpsC 485285..485986 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  QYC25_RS02270 (QYC25_02270) rplP 485999..486409 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=777658 QYC25_RS02225 WP_000339836.1 481052..481519(-) (pilD) [Escherichia coli strain STEC1585]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=777658 QYC25_RS02225 WP_000339836.1 481052..481519(-) (pilD) [Escherichia coli strain STEC1585]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361