Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PH545_RS14290 Genome accession   NZ_CP116414
Coordinates   3040074..3040799 (+) Length   241 a.a.
NCBI ID   WP_289881539.1    Uniprot ID   -
Organism   Vibrio harveyi strain K2014767     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3035074..3045799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PH545_RS14275 (PH545_14275) - 3036198..3038519 (+) 2322 WP_017189965.1 Tex family protein -
  PH545_RS14280 (PH545_14280) - 3038624..3039088 (-) 465 WP_009698973.1 hypothetical protein -
  PH545_RS14285 (PH545_14285) bioH 3039225..3039989 (-) 765 WP_289880308.1 pimeloyl-ACP methyl ester esterase BioH -
  PH545_RS14290 (PH545_14290) comF 3040074..3040799 (+) 726 WP_289881539.1 ComF family protein Machinery gene
  PH545_RS14295 (PH545_14295) nfuA 3040897..3041481 (+) 585 WP_005448480.1 Fe-S biogenesis protein NfuA -
  PH545_RS14300 (PH545_14300) nudE 3041657..3042223 (+) 567 WP_009698975.1 ADP compounds hydrolase NudE -
  PH545_RS14305 (PH545_14305) cysQ 3042271..3043098 (+) 828 WP_005448488.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  PH545_RS14310 (PH545_14310) - 3043388..3044149 (-) 762 WP_289880312.1 type II secretion system protein N -
  PH545_RS14315 (PH545_14315) - 3044151..3044642 (-) 492 WP_289881540.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27666.77 Da        Isoelectric Point: 8.7137

>NTDB_id=777293 PH545_RS14290 WP_289881539.1 3040074..3040799(+) (comF) [Vibrio harveyi strain K2014767]
MLSHQWQNIMHRVLSSQCGLCRFPIPHRQTPNLMRWCDSCFDHLTPIKRCSRCGLKMTKEESQSSAECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEAWQVSTLTQLLAERIEQPAPVITSVPVHWQRYIKRGFNQSHILTKHLARHLDVRYES
KVFKRVKSAQSQRGNKKASREQNLQGAFALQGEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
I

Nucleotide


Download         Length: 726 bp        

>NTDB_id=777293 PH545_RS14290 WP_289881539.1 3040074..3040799(+) (comF) [Vibrio harveyi strain K2014767]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATACCTCA
CCGCCAAACGCCCAACCTAATGCGTTGGTGTGACAGCTGTTTTGACCACCTCACACCAATCAAACGCTGCTCACGTTGTG
GTTTAAAAATGACAAAAGAGGAATCACAATCCTCCGCAGAGTGCGGAGAATGCTTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTAGGTGACTATGACTTTCCGCTCTCTCAACAAGTACAGCGCTTTAAAGATCACGGCGAGGCATGGCAGGT
GAGTACGCTTACTCAACTATTAGCAGAACGAATTGAGCAGCCTGCCCCCGTCATCACCAGCGTGCCCGTTCACTGGCAGC
GCTACATAAAACGAGGATTCAATCAGAGCCATATCTTAACCAAACACCTCGCCCGCCATTTAGATGTGCGATATGAAAGC
AAGGTATTTAAACGTGTCAAAAGCGCTCAGTCGCAGCGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATCTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCCGGCTCA
ATCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

91.701

100

0.917
  comF Vibrio cholerae strain A1552

47.479

98.755

0.469