Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   QTO28_RS11610 Genome accession   NZ_CP129125
Coordinates   2546397..2548628 (-) Length   743 a.a.
NCBI ID   WP_037827840.1    Uniprot ID   A0ABZ1K2R2
Organism   Streptomyces sp. P9-2B-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2541397..2553628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTO28_RS11595 (QTO28_11595) - 2541403..2541708 (+) 306 WP_030636412.1 heavy-metal-associated domain-containing protein -
  QTO28_RS11600 (QTO28_11600) - 2541947..2544388 (+) 2442 WP_290345239.1 heavy metal translocating P-type ATPase -
  QTO28_RS11605 (QTO28_11605) - 2544901..2546199 (-) 1299 WP_014156200.1 citrate synthase -
  QTO28_RS11610 (QTO28_11610) recD/recD2/recDB 2546397..2548628 (-) 2232 WP_037827840.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QTO28_RS11615 (QTO28_11615) - 2548865..2549410 (+) 546 WP_237524480.1 SMI1/KNR4 family protein -
  QTO28_RS11620 (QTO28_11620) - 2549653..2550405 (+) 753 WP_290345240.1 class I SAM-dependent methyltransferase -
  QTO28_RS11625 (QTO28_11625) - 2550457..2551827 (-) 1371 WP_014156195.1 hydrogenase expression protein HypA -
  QTO28_RS11630 (QTO28_11630) - 2552045..2552452 (-) 408 WP_014156194.1 RidA family protein -
  QTO28_RS11635 (QTO28_11635) - 2552579..2552962 (+) 384 WP_014156193.1 helix-turn-helix domain-containing protein -
  QTO28_RS11640 (QTO28_11640) - 2553028..2553576 (-) 549 WP_290345241.1 hypothetical protein -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 80068.59 Da        Isoelectric Point: 6.4599

>NTDB_id=777110 QTO28_RS11610 WP_037827840.1 2546397..2548628(-) (recD/recD2/recDB) [Streptomyces sp. P9-2B-1]
MSNSAVLEGVLERITYANEENGYTVARVDTGRGAGDLLTVVGSLLGAQPGESLRMEGRWASHPQFGKQFQVDNYTTVLPA
TIQGIRRYLGSGLIKGIGPVMADRITTHFGVDTLDIIEQHPKRLVEVPGLGPKRTKMIAAAWEEQKAIKEVMVFLQSVGV
STSIAVRIYKKYEDASISVVKNQPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVKAGLQYALSQSTDQGHCFLPEERL
IADGVKLLQVDTGLVIDCLAELAQDPEGVVREKVPGPEDGQPVTAVYLVPFHRAEISLAAQVQRLLRTPEDRMPGFQDVD
WDKALGWLAGRTGATLAPEQEAAVRLALTRKVAVLTGGPGCGKSFTVRSVVELARARNAKVVLAAPTGRAAKRLSELTGA
EASTVHRLLELKPGGDAAYDRERPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGEVLRDLLAE
GGPVPAVRLTTIFRQAQKSGVVTNAHRINSGVPPLTQGLDDFFLFVEDETEDAGVLAVDVAARRIPAKFGLNPRRDVQVL
APMHRGPAGAGHLNGLLQQAITPGRPGLPEKRFGGRVFRVGDKVTQIRNNYDKGENGVFNGTVGVVTALDADEQRLTVLT
DEEEEIAYDFDELDELAHAYAMTIHRSQGSEYPAVVIPVTTSAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRTVS
AGRRCTALDFRLSGGTAEDFPEK

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=777110 QTO28_RS11610 WP_037827840.1 2546397..2548628(-) (recD/recD2/recDB) [Streptomyces sp. P9-2B-1]
ATGTCCAACTCCGCCGTGCTCGAAGGCGTCCTGGAGCGCATCACCTACGCCAACGAGGAGAACGGCTACACCGTGGCCCG
CGTCGACACGGGGCGCGGTGCGGGGGACCTGCTCACCGTCGTCGGCTCGCTCCTCGGTGCCCAGCCCGGCGAGTCCCTGC
GGATGGAGGGGCGTTGGGCCTCGCACCCGCAGTTCGGCAAGCAGTTCCAGGTCGACAACTACACGACGGTCCTCCCGGCG
ACCATCCAGGGCATCCGCCGCTACCTCGGATCGGGCCTGATCAAGGGCATCGGGCCGGTCATGGCCGACCGCATCACCAC
CCACTTCGGCGTCGACACCCTGGACATCATCGAGCAGCACCCGAAGCGCCTCGTGGAGGTGCCCGGACTCGGCCCGAAGC
GGACGAAGATGATCGCCGCGGCCTGGGAGGAACAGAAGGCGATCAAGGAGGTCATGGTCTTCCTCCAGAGCGTCGGCGTC
TCCACCTCCATCGCCGTCCGCATCTACAAGAAGTACGAGGACGCCTCGATCTCCGTCGTGAAGAACCAGCCCTACCGGCT
GGCCGCCGACGTCTGGGGCATCGGATTCCTCACCGCCGACCGCATCGCGCAGGCCGTCGGCATCCCGCACGACAGCCCCG
AGCGGGTCAAGGCCGGGCTCCAGTACGCCCTTTCGCAGTCCACCGACCAGGGGCACTGCTTCCTGCCCGAGGAGCGGCTG
ATCGCCGACGGGGTGAAGCTGCTCCAGGTCGACACGGGGCTCGTCATCGACTGCCTGGCCGAGCTCGCGCAGGACCCGGA
GGGCGTCGTACGGGAGAAGGTGCCGGGCCCCGAGGACGGTCAGCCGGTCACCGCCGTGTACCTGGTCCCCTTCCACCGCG
CCGAGATCTCCCTGGCCGCCCAGGTGCAGCGCCTGCTGCGCACCCCGGAGGACCGGATGCCCGGCTTCCAGGACGTCGAC
TGGGACAAGGCGCTCGGCTGGCTCGCGGGGCGTACGGGGGCCACGCTCGCCCCCGAGCAGGAGGCCGCCGTCCGGCTCGC
GCTCACCCGGAAGGTCGCCGTCCTCACCGGCGGCCCCGGCTGCGGCAAGTCGTTCACCGTCCGGTCCGTGGTCGAGCTGG
CCCGCGCGCGGAACGCCAAGGTCGTGCTCGCCGCGCCCACCGGGCGGGCGGCGAAGAGGCTCTCGGAGCTGACCGGCGCG
GAGGCCTCCACCGTGCACCGGCTGCTGGAGCTGAAACCCGGCGGGGACGCGGCGTACGACCGCGAACGGCCGCTGGACGC
CGATCTGGTCGTCGTCGACGAGGCGTCGATGCTCGATCTGCTGCTCGCCAACAAGCTCGTCAAGGCCGTGGCGCCCGGTG
CCCACCTCCTCCTGGTCGGCGATGTGGACCAGTTGCCCTCGGTCGGCGCGGGGGAGGTGCTGCGCGACCTGCTGGCCGAG
GGCGGACCCGTCCCCGCCGTCCGGCTGACCACCATCTTCCGGCAGGCCCAGAAGTCCGGCGTCGTCACCAACGCCCACCG
CATCAACTCCGGGGTACCGCCGCTGACCCAGGGGCTGGACGACTTCTTCCTGTTCGTGGAGGACGAGACGGAGGACGCCG
GGGTGCTCGCCGTCGATGTCGCCGCCCGCCGCATCCCCGCGAAGTTCGGCCTGAATCCCCGCCGCGACGTGCAGGTCCTC
GCCCCGATGCACCGCGGCCCCGCGGGCGCCGGCCATCTCAACGGACTGCTCCAGCAGGCCATCACCCCCGGACGCCCGGG
CCTGCCCGAGAAGCGGTTCGGAGGCCGCGTCTTCCGGGTAGGCGACAAGGTGACACAGATCAGGAACAACTATGACAAGG
GGGAGAACGGGGTCTTCAACGGCACGGTCGGTGTCGTGACCGCGCTCGACGCGGACGAGCAGAGGCTGACCGTCCTCACG
GACGAGGAGGAGGAGATCGCGTACGACTTCGACGAGCTGGACGAACTGGCCCACGCGTACGCCATGACCATCCACCGCTC
GCAGGGCAGCGAGTATCCGGCGGTCGTCATCCCGGTCACCACCAGCGCCTGGATGATGCTCCAGCGGAACCTGCTCTACA
CCGCCGTGACCAGGGCCAAGAAGCTCGTCGTGCTGGTCGGCTCGCGCAAGGCCATCGGCCAGGCGGTCCGCACCGTTTCC
GCAGGCAGGCGCTGTACGGCACTGGATTTCCGGCTCAGCGGCGGTACGGCGGAAGACTTCCCGGAAAAATGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-638)

Helix-hairpin-helix domain (HHH_5)

(94-143)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)

AAA domain (AAA_30)

(335-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.209

100

0.362