Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   PFZ59_RS07800 Genome accession   NZ_CP116393
Coordinates   1537642..1538481 (+) Length   279 a.a.
NCBI ID   WP_277696769.1    Uniprot ID   -
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1532642..1543481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS07770 (PFZ59_07770) - 1533107..1533985 (+) 879 WP_277696768.1 F0F1 ATP synthase subunit gamma -
  PFZ59_RS07775 (PFZ59_07775) atpD 1534005..1535411 (+) 1407 WP_002936008.1 F0F1 ATP synthase subunit beta -
  PFZ59_RS07780 (PFZ59_07780) - 1535421..1535837 (+) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  PFZ59_RS07785 (PFZ59_07785) - 1535897..1536121 (+) 225 WP_024387485.1 DUF1146 family protein -
  PFZ59_RS07790 (PFZ59_07790) murA 1536145..1537428 (+) 1284 WP_208581952.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  PFZ59_RS07795 (PFZ59_07795) - 1537421..1537612 (+) 192 WP_014637807.1 DNA-directed RNA polymerase subunit beta -
  PFZ59_RS07800 (PFZ59_07800) endA 1537642..1538481 (+) 840 WP_277696769.1 DNA/RNA non-specific endonuclease Machinery gene
  PFZ59_RS07805 (PFZ59_07805) pheS 1538781..1539824 (+) 1044 WP_024403151.1 phenylalanine--tRNA ligase subunit alpha -
  PFZ59_RS07810 (PFZ59_07810) - 1540026..1540547 (+) 522 WP_024389296.1 GNAT family N-acetyltransferase -
  PFZ59_RS07815 (PFZ59_07815) pheT 1540549..1542948 (+) 2400 WP_277696770.1 phenylalanine--tRNA ligase subunit beta -
  PFZ59_RS07820 (PFZ59_07820) - 1543002..1543268 (+) 267 WP_277696771.1 DUF2087 domain-containing protein -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30208.38 Da        Isoelectric Point: 5.9494

>NTDB_id=777109 PFZ59_RS07800 WP_277696769.1 1537642..1538481(+) (endA) [Streptococcus suis strain SS/UPM/MY/F001]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNQSKASESTPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQIHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRIRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEITVNE

Nucleotide


Download         Length: 840 bp        

>NTDB_id=777109 PFZ59_RS07800 WP_277696769.1 1537642..1538481(+) (endA) [Streptococcus suis strain SS/UPM/MY/F001]
ATGGCGAAGAAAAATGTAAAAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCCGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGCGAGAGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGCGCT
GGAGCATTTATTATTAACGGTAATCAAACAGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGCGATAATAAGACAAA
GACAGTCCAGGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCTAAATCTACACGTCAGTATAAGGATCGTGAAG
AAACAGGAAATGGTCGAACTTCTTGGACACCTGCGGGTTGGCATCAGATCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGCTTCGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTATCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGTGGCTTGAG
TATTAATTATCATAGTGGGGAAATCACGGTGAATGAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

69.915

84.588

0.591
  endA Streptococcus pneumoniae D39

69.915

84.588

0.591
  endA Streptococcus pneumoniae R6

69.915

84.588

0.591
  endA Streptococcus pneumoniae TIGR4

69.915

84.588

0.591