Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   PIB33_RS08625 Genome accession   NZ_CP116391
Coordinates   1654377..1655156 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain GXD-20     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1649377..1660156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB33_RS08605 (PIB33_08605) trmFO 1650070..1651377 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  PIB33_RS08610 (PIB33_08610) xerC 1651445..1652359 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  PIB33_RS08615 (PIB33_08615) clpQ 1652372..1652917 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  PIB33_RS08620 (PIB33_08620) hslU 1652934..1654337 (+) 1404 WP_003245556.1 HslU--HslV peptidase ATPase subunit -
  PIB33_RS08625 (PIB33_08625) codY 1654377..1655156 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  PIB33_RS08630 (PIB33_08630) flgB 1655536..1655925 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  PIB33_RS08635 (PIB33_08635) flgC 1655925..1656377 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  PIB33_RS08640 (PIB33_08640) fliE 1656388..1656708 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  PIB33_RS08645 (PIB33_08645) fliF 1656754..1658364 (+) 1611 WP_051388163.1 flagellar basal-body MS-ring/collar protein FliF -
  PIB33_RS08650 (PIB33_08650) fliG 1658377..1659393 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  PIB33_RS08655 (PIB33_08655) fliH 1659386..1660138 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=777015 PIB33_RS08625 WP_003220850.1 1654377..1655156(+) (codY) [Bacillus subtilis strain GXD-20]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=777015 PIB33_RS08625 WP_003220850.1 1654377..1655156(+) (codY) [Bacillus subtilis strain GXD-20]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467