Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   QWI19_RS06145 Genome accession   NZ_CP129123
Coordinates   1190504..1191421 (+) Length   305 a.a.
NCBI ID   WP_015252359.1    Uniprot ID   -
Organism   Bacillus subtilis strain 6D1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1185504..1196421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWI19_RS06130 trpS 1186084..1187076 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  QWI19_RS06135 oppA 1187820..1189457 (+) 1638 WP_015252360.1 oligopeptide ABC transporter substrate-binding protein OppA -
  QWI19_RS06140 oppB 1189565..1190500 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  QWI19_RS06145 amiD 1190504..1191421 (+) 918 WP_015252359.1 oligopeptide ABC transporter permease OppC Regulator
  QWI19_RS06150 oppD 1191426..1192502 (+) 1077 WP_015252358.1 oligopeptide ABC transporter ATP-binding protein OppD -
  QWI19_RS06155 oppF 1192504..1193421 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  QWI19_RS06160 yjbB 1193528..1194745 (+) 1218 WP_080019554.1 MFS transporter -
  QWI19_RS06165 yjbC 1194909..1195487 (+) 579 WP_003244921.1 GNAT family N-acetyltransferase -
  QWI19_RS06170 spx 1195668..1196063 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33635.15 Da        Isoelectric Point: 10.2873

>NTDB_id=776985 QWI19_RS06145 WP_015252359.1 1190504..1191421(+) (amiD) [Bacillus subtilis strain 6D1]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAILDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=776985 QWI19_RS06145 WP_015252359.1 1190504..1191421(+) (amiD) [Bacillus subtilis strain 6D1]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGAGACATTTTCGTCCGTACATGGGTAGGGGCTCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTATTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364