Detailed information NTG0776949

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: PIG43_RS10705
• Genome accession: NZ_CP116387
• Coordinates: 2191714..2192415 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594579.1
• Uniprot ID: A0A0D5YJA0
• Organism: Acinetobacter baumannii strain WM98
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2186714..2197415

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PIG43_RS10675 (PIG43_10645)	-	2187021..2187464 (-)	444	WP_001246675.1	SRPBCC family protein	-
PIG43_RS10680 (PIG43_10650)	tadA	2187534..2188037 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
PIG43_RS10685 (PIG43_10655)	-	2188044..2189168 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
PIG43_RS10690 (PIG43_10660)	ung	2189165..2189878 (-)	714	WP_001177527.1	uracil-DNA glycosylase	-
PIG43_RS10695 (PIG43_10665)	-	2189929..2190525 (-)	597	WP_000908449.1	6-carboxytetrahydropterin synthase	-
PIG43_RS10700 (PIG43_10670)	gspK	2190755..2191714 (-)	960	WP_000301478.1	type II secretion system minor pseudopilin GspK	-
PIG43_RS10705 (PIG43_10675)	xcpW	2191714..2192415 (-)	702	WP_000594579.1	type II secretion system minor pseudopilin GspJ	Machinery gene
PIG43_RS10710 (PIG43_10680)	xcpV	2192415..2192795 (-)	381	WP_000836914.1	type II secretion system minor pseudopilin GspI	Machinery gene
PIG43_RS10715 (PIG43_10685)	-	2192785..2193339 (-)	555	WP_000841373.1	type II secretion system protein	-
PIG43_RS10720 (PIG43_10690)	-	2193349..2193957 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
PIG43_RS10725 (PIG43_10695)	-	2193995..2194768 (-)	774	WP_000497300.1	TatD family hydrolase	-
PIG43_RS10730 (PIG43_10700)	-	2194786..2195127 (-)	342	WP_001183027.1	PilZ domain-containing protein	-
PIG43_RS10735 (PIG43_10705)	-	2195139..2196119 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
PIG43_RS10740 (PIG43_10710)	kdsB	2196131..2196892 (-)	762	WP_000680692.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26707.66 Da
• Isoelectric Point: 9.5501

>NTDB_id=776949 PIG43_RS10705 WP_000594579.1 2191714..2192415(-) (xcpW) [Acinetobacter baumannii strain WM98]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLFKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=776949 PIG43_RS10705 WP_000594579.1 2191714..2192415(-) (xcpW) [Acinetobacter baumannii strain WM98]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGTTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCGGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

3D structure

• AlphaFold DB: A0A0D5YJA0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.283	100	0.983